barSeed - Barley Seed Development Database

Probe CUST_13642_PI390587928

Source Contig U35_317

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13642_PI390587928	Hv_44K_v2	AATAAATGTAATGATGATGAATGAAGTGTCGTGACTGGAAAATGGCTTTTCCAATCATGG	418	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.023	0.014	0.231	2.483	7.788	10.878
Raw	23.500	19.287	332.913	4831.240	5756.053	8776.657

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64273.1	1324	7e-23	1211 - 1270	98	59 / 60	plus	ABC00518 ABC00817
JLOC1	JLOC1_42189.1	1301	4e-23	1211 - 1270	98	59 / 60	plus
Harvest21	ABC00810	837	3e-25	734 - 793	100	60 / 60	plus
Harvest21	ABC00764	1235	3e-25	1132 - 1191	100	60 / 60	plus
Harvest21	ABC00263	493	3e-25	434 - 493	100	60 / 60	plus
Harvest21	ABC00219	1247	3e-25	1138 - 1197	100	60 / 60	plus
Harvest21	ABC00518	1184	8e-21	1123 - 1184	95	59 / 62	plus	ABC00518
Harvest35	U35_317	478	3e-25	419 - 478	100	60 / 60	plus
Harvest35	U35_69	1247	3e-25	1138 - 1197	100	60 / 60	plus

Contig Sequence (478 bp)

>U35_317 478 Hv_44K_v2
TTCACAACAGCAATTTCCCCAGCCACAACAATCATTCCCTCAGCAACCACAACAGCCATT
TCCTCAATCCCAACAGCCATGCCTCCAGCAACCACAACACCAATTTCCCCAACCGTCACA
ACCATTCCCCCAGCAACCACTACAACCGTTTCCCCGCCCCTTCCTACCATTCCCCGAGCA
ACCACTCCCTCAACCACCACAAGAATCATTCCCCCAACCCCCACAATCATACCCTCAACC
GCAACAACTAGCTCAAATGGAAGCAATCAGATCGTTGGTGTTGCAGTCCGTTCTGGCCAT
GTGCAACTTTAATGTCCCACCTAACTGCTCCACTATGAGAGCACCATTTTTCAGCTTAGT
CAACGCTGGAATGCTATAATAATTAATAGATGGATCATCATTCGTTAGCCGATATACCAA
TAAATGTAATGATGATGAATGAAGTGTCGTGACTGGAAAATGGCTTTTCCAATCATGG

Homology of Contig U35_317 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None