barSeed - Barley Seed Development Database

Probe CUST_13641_PI390587928

Source Contig U35_1494

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13641_PI390587928	Hv_44K_v2	GTTTGATACAGTAGGAGTGCAGGTTCCTAGGCATGTTTTCTTTTTATCAAGGGAATAATA	787	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46147.1	1883	3e-22	689 - 747	98	59 / 60	minus	ABC04102
JLOC1	JLOC1_29902.1	1094	1e-22	553 - 611	98	59 / 60	minus
Harvest21	ABC04102	1012	3e-25	1 - 60	100	60 / 60	minus	ABC04102
Harvest35	U35_1494	847	3e-25	788 - 847	100	60 / 60	plus

Contig Sequence (847 bp)

>U35_1494 847 Hv_44K_v2
GATATTGATAATATCACACTCAAAGATAAGTGGTTGTGTAATAGCAAAACAACCTAAAAT
TTGGCAACAAGACAATAGTTAGTATTTTTGTTCTTCTTTATCAAGTCACTGTCAATGCAT
CTTCCTCTTGTATTTGGTCGAACCTTCACGTTGTCTCTTGTTATTTCCAGCTTGAATAGG
TGCAGCTTTGACAAAGTATAGGATGGGCAGATGTCGCGAAAGGAATAATCATGGTTTTTG
AAGACTGATAATGCTCCCTCGAGTACTACACAGCAAAAAAACTCAGCATTTGCTTGTAGC
TGCTGACGGGTATGCATTGGAGAGACTAACGCTGCTTTCTGAACTCAATCAATGTAAAGA
CGTTGCGAGTAAACAAAGTTCCAAATACTTTGGCGCTGGCTGAACAACACCATTTCCACC
AGATCAAGACGGTGGTATATACATCCGAATTCGAACCAAAGAGTGCCTTAAAAGGAGGGA
ATTAGCAGGGCAAGGAAAGAATAATGGAAGCTCTGGCGGACGCTTAGCCGCCAACAGGAC
GAGGACGCCATCGACTCCATCTTTGCAGACCTCCGGAGGATGGCCTCCCGCTTGGCACCG
CCGCTCCCTCCGTCACCACCCGAGTCGGATTAGCTCCTTCCATCGCGGTCTTTTCCGTCT
TTGTTTTTTGTTCTTATGTTAGGGCTTGTTGAGCTGTGTCCTCAGCAGAATCCCTCGTAC
TGGGTGTCGTGCTATCTTGGGTGTGTGTGTTCGGATTTGGACTTATGTTTGTACTCGTGG
CTTGATGGTTTGATACAGTAGGAGTGCAGGTTCCTAGGCATGTTTTCTTTTTATCAAGGG
AATAATA

Homology of Contig U35_1494 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None