barSeed - Barley Seed Development Database

Probe CUST_13634_PI390587928

Source Contig U35_1499

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13634_PI390587928	Hv_44K_v2	CCCTGCGCCCATTGTATTGCAGAAAGAAACATGTTAATTTAGCAGTATGAAATTATAGGC	1836	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.209	1.449	1.201	0.946	0.436	0.488
Raw	1166.922	2221.025	1569.103	1927.271	314.469	387.991

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250045.1	1923	2e-24	1849 - 1908	100	60 / 60	plus	ABC04186
MLOC	MLOC_37630.1	2449	2e-24	2313 - 2372	100	60 / 60	plus	ABC04186
MLOC	MLOC_37630.3	1870	2e-24	1788 - 1847	100	60 / 60	plus	ABC04186
JLOC1	JLOC1_24375.2	2252	8e-25	1709 - 1768	100	60 / 60	plus
JLOC1	JLOC1_24375.1	2254	8e-25	1711 - 1770	100	60 / 60	plus
Harvest21	ABC04186	1924	5e-23	1837 - 1895	98	59 / 60	plus	ABC04186
Harvest35	U35_1499	1925	3e-25	1837 - 1896	100	60 / 60	plus

Contig Sequence (1925 bp)

>U35_1499 1925 Hv_44K_v2
GCACGCACAGGCCTGGGCTAGGAGTACTGGAGCAGTATACATACGCGAGAGAGGCAGAGC
GGTCAAGGCTGGGAGAGAGGGAGAGATATATAGAGAGAGAGAGCTCGTCGTCGTCATCAT
CATCATCGTTCGTTCACAGGAGGAGTAGTAGTATCAGTGAGAGAGTCAGAGGAGGAAGGA
AGGTTCAGAGGGGGTGGGGAGCGAAACGAAATCCGTTTATTCCTCCTGTATCGGAGGCAA
GTCCGCGGCCTCCTTTCCCGAGCCGGCTGGATGGAGAGGGACTTCCTGGGCGCCATAGGC
CACGAGCAGCAGCAGCTGCTGATGCAGCAGCAGCAGCAGCGCCAGCGCGCCGCCGCCGAG
GACGACGCCGCCAGAAAGGAGTCAGCTTACTTTGGGGGAGGAGGAGTGCCGCCCATGGAC
TGGTCCTTCGCTGGCAGGGCCGGGGCCGCGCCGGCGGTCATGTCTTTCAGGTCGGCGGCG
AGGGAAGAGCAGCAGCAGCAGCAGGGCGAGCTCGCCTTCTCCAAGCAGCAGGCCTCGCGT
GTCCTCACTCCACAGAGATCGTTTGGCGCTGAGAACCATGGCAGCGTGCAGTACGCCGCC
GCCGCGCGTGCGGCTTACGGTGGGCAGCCTCCACAGCAGCAGCATGCTCCTAATGGTGCT
AGGGTGATCCCAATGTCCTCGCCGTTCAACCCCAACAATCCCATGTTCAGGGTTCAGAGT
TCGCCTAACCTCCCCAATGGCGTTGCTGCTGGGAGCCCGTTCAAACAGCCGCCTTTCGCG
ATGAACAATGCGGTCGCTGCTTCCACCGTTGGTGTGTACAAATCAAGGGACATGCCGAAG
CCAAAGACAGCGCAATTAACCATCTTCTACGCTGGTTCTGTCAATGTATTCAACAACGTC
TCAGCAGAAAAGGCTCAGGAACTCATGTTCTTAGCTAGCAGAGGATCTCTTCCAGCTGCA
CCCAGTACTGTTACTCGCAGCCCAGATGCAACCTTTTTCACTCCGGCAAAACTCGCAGCA
CCTGAGCTTTCACCTGCAAAGCAGATGCTACCTCAGATGCCACAACGTGTTTCGCCTCCT
TTGTCAGGCATTTCCAAACCGATCTCCATGGTGTCCCAAGCTGCATGCGTCCCCAAGAGC
GCCTCTAGCTCCAACATTGACTCGACAGCGCCAAAATCTTCAGGCCAGTTGGTTGTGCCT
CCCACGAGTCAGCCTTCGTCGTCCACTCATCCTGTGACACTAGCCTCCACCACTGCTGCA
AGTATTATGCCAAGAGCTGTTCCTCAAGCCCGGAAGGCGTCCCTTGCCCGATTCTTGGAG
AAAAGGAAAGAAAGAGTGACAACTACGGCGCCGTATCCATCAGCCAAGAGCCCGATGGAG
AGCAGCGACACGGTCGGAAGCGCCAACGACAACAACAGCAAGTCCTCATCATGCACAGAG
ATCGCCTTCTCAAGCAACCATGAGGAGTCGCTGCGTCTAGGCGGCCGGCCCAGGAACATC
AGCTTTAGCGGGGAGTCCCCGAGTACAAAACTACACATCTGATCCGATATAATAATCTTC
CGGTGTCCATAGGTTCAAATTCAACCATGATGGCTGATGCAAAACCGTAATAAGATTTTG
CATCCAGGCAGGAGGAGGGAGAAGGGATATTGGGAAAAGTCAGGCAGCATGATATATGTT
ACTCCTATTGATGATGCTCTTATTCTTGTTTATGATGTGTTTTGTTTTGGTTAATTAGTC
CGCGACCTGTAATGCTGGTCTAGCTGGTGCAACACCCCACCTAACTAACAAGAGAGCTGT
CGCTTGCAGACTCTTGATTGTTATTTTTTGTTTTGCCCCTGCGCCCATTGTATTGCAGAA
AGAAACATGTTAATTTAGCAGTATGAAATTATAGGCTTACAAATTTCCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_1499 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g23660.1	417	1e-134	protein\|ZIM motif family protein, expressed
Brachypodium v1_2	Bradi4g29830.1	419	3e-160
Arabidopsis v10	None