barSeed - Barley Seed Development Database

Probe CUST_13633_PI390587928

Source Contig U35_320

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13633_PI390587928	Hv_44K_v2	CCATGGATCCTTCTGGAACAAGGTGAGAGAATAAAATGGTTGGGCTGCCTCTGTAAAAAA	1299	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.374	1.579	2.726	3.219
Raw	31.583	44.415	6790.413	40606.433	25813.933	33666.200

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC00280	714	3e-25	644 - 703	100	60 / 60	plus	ABC00280
Harvest21	ABC00788	1371	1e-23	1300 - 1360	98	60 / 61	plus	ABC00788
Harvest35	U35_320	1370	3e-25	1300 - 1359	100	60 / 60	plus

Contig Sequence (1370 bp)

>U35_320 1370 Hv_44K_v2
CATCCATTTCCTAGCGAAGACCCATCAACACATGGCAGCCATGACAATCACCGCCTCCAG
CTTCCTCAAGACCTCATTCCCTGCCGTTTGCCTTCCGACAGCCACTCATGCCCCCTCCCG
CGCCTCCACCCGGCGCGTCGCGGCCATCTGCAACTCCATCTCCTCCTCTACCCCTCCCTA
TGATCTCAATTGCTTCAAGTTCAACCCCATGAAAGAATCCGTCGCCTCCCGCGAGATGAC
CCGTCGGTACATGACCGACATGATCGCCGACGTCAACACCGATGTCATTATCATCGGAAC
TGGCTCCGCGGGGCTGTCCTGCGCGTACGAGCTCTCGAAGGACCCATCTGTCAACATCGC
CATCGTCGAACGGTCCGTTTCCCCCGGCGGAAGCGGCTGGCTCGGCAGCCAGCTCTTCTC
CGCCATGGTCGTGCGCAAGCCGGCACACCTCTTGCTCGATGAGCTCAACATCGAGTACGA
CGAGCAGGAGGACTATGTCGTCATCAAGCATGCTGCGCTCTTCACCTCCACCCTGTTGAG
CCGCCTCCTCGCGCAGCCCAACGTGAAGCTCTTTAACGCCGTTGTCGTGGAAGACTTGGT
CGTCAAAGAGAACCGCGTCGCCGGTGTGATCACGAACTGGGCGTCCGCATCGATGAACCA
GGACATAAAATCTCACATCGACCCAAACGTCATGGAAGCCAAGATCGTTGTAAGCTCCTG
CGGCCACGAGGGGTTATTCAGTGCCGACGGACTCAAACGGCTCGAGGACATTGGAACGAT
CAACACTGTGCCCGGAATGAAAGTGCTTGATGTGAACACTGCCGAGGATGCAATCGTCTC
CTTGACCCGCGAGGTCGTCCCAGGTATGATCGTCGCTGGCATTGAGGTTGCCGAGATCGA
CGGCCCCCATAGAATGCTTCCAACGTTCGGTGCCACGATCATCTCCGGCCAGAAGGCAGC
GCACCTGGCACTCAAGGCGCTCGGCCAGCCGAACGACATCGACGAACAACGATACTCAAG
GGAGTCAGGGCGCTACACCCGGCGACGGTCCTAGTGTCGACGAGCAACGGTGACACCGTG
GACGCCTGAACGACAGAGATGACACCAAAACGTCTGCTAGTGTCTGGTTTGGGGCAACAA
CCAATAAGATGGTTTGATGAATCAAAGGAAGATTTTATTATGTAATTTGTCAACTTGCGT
TTAATTCCCATGTTCATCTCTACTAGTACTAGTGGTTTCTTGATGTTAGCGTCTTATTCA
TAGCACTGCTGTCGTGTGTCCTTCGGAGTGACGCCAACTCCATGGATCCTTCTGGAACAA
GGTGAGAGAATAAAATGGTTGGGCTGCCTCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g34570.1	356	8e-163	protein\|FAD dependent oxidoreductase domain containing protein, expressed
Brachypodium v1_2	Bradi1g25860.1	353	1e-172
Arabidopsis v10	AT5G54770.1	349	1e-138	\| Symbols: THI1, TZ, THI4 \| thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) \| chr5:22246634-22247891 FORWARD LENGTH=349