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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13628_PI390587928Hv_44K_v2TTGCTTCCCTGATGTACTACCATGACTGAGATATAATGGTATATGCAGGCCCTGGGTAAA675GeneList: lightgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0100.0100.3301.9282.6254.774
Raw 69.306132.76213723.303114053.83357529.233114500.766



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_44740.110712e-23900 - 95710058 / 58plus ABC00222 ABC00254 ABC00295 ABC00526 ABC00796 ABC00797 ABC32936 ABC33046 ABC45110 ABC52840
JLOC1JLOC1_29013.19371e-23813 - 87010058 / 58plus
Harvest21ABC007978083e-25677 - 73610060 / 60plusABC00797
Harvest35U35_3268073e-25676 - 73510060 / 60plus



Contig Sequence (807 bp)

>U35_326 807 Hv_44K_v2
GCCACAACCACCATCTCCTATAACTAAGAGCCATCCAAGCCCAGTCTCAATACTCCCATC
AGCCAAAGCCTGTGTTCTGCAAGATAGCCTGCCAGCCATGGGAAGCAAGGGCCTCAAGGG
TGTGATGGTGTGTTTACTCATACTGGGGTTGGTTCTGGAACATGTGCAAGTAGAAGGCAA
GAGTTGCTGCAGGAGCACCCTAGGAAGAAATTGCTACAACCTTTGCCGCGTCCGTGGTGC
TCAGAAGTTATGCGCAAACGCGTGTAGGTGTAAACTCACAAGTGGCCTAAAATGCCCTTC
AAGCTTCCCAAAATTGGCCCTTGTGTCAAACTCAGATGAACCAGACACCATCGACTATTG
CAACTTGGGGTGTAGGGCTTCCATGTGTGACTACATGGTCAACGCAGCTGCTGACGACGA
AGAGATGAAACTCTATGTGGAACATTGTAGTGATGCTTGTGTCAATTTCTGTAACGGTGA
TGTTGGCCTCACATCCCTTACTGCCTAATGATGTGTATCCATGGTCTGAGATTTCAAAGG
GCAAGGTTGTATCTCACCTTTGCGTTCAATAAAATTGGATCCCATCGAGAGTATCCAAAC
CAGTGTGTCAACCTGTTTTATGTGTGTGTATTTCCATTCCTTGTTCGAATAAAAACCATC
ATGTTGGATGCCATTTTGCTTCCCTGATGTACTACCATGACTGAGATATAATGGTATATG
CAGGCCCTGGGTAAAAAAAAAAAAAAAAACGTGCGTGTGGATATAAACTCTATGAGTAAA
TGCTTCAAGTAAAAAAAAAAAAAAAAA



Homology of Contig U35_326 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None