barSeed - Barley Seed Development Database

Probe CUST_13620_PI390587928

Source Contig U35_334

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13620_PI390587928	Hv_44K_v2	GTAAATCTCCCTCCTTTCACTGATGATTCTCTCTCTGTTCCAACCAATGGATGCAGGACT	266	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5335.1	3537	2e-24	1606 - 1665	100	60 / 60	minus	ABC10709
JLOC1	JLOC1_3424.3	1891	8e-25	1604 - 1663	100	60 / 60	minus
JLOC1	JLOC1_3424.2	1836	8e-25	1549 - 1608	100	60 / 60	minus
JLOC1	JLOC1_3424.1	1883	8e-25	1596 - 1655	100	60 / 60	minus
Harvest21	ABC10708	607	3e-25	267 - 326	100	60 / 60	plus
Harvest35	U35_334	630	3e-25	267 - 326	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_334 630 Hv_44K_v2
AACGACATCGATGTTGATCCGGACAACATGACATATGAGGAAAGGCAGGAACTAGTGGAA
TCAGTGGGAAATGAGAGCAGAGGTTTGTCTGATGAGCTCATGTCATATTTGGTGCCATGG
AAGTACAAGTCAGGATCAGGGTTCTTTTCAAAGAAGACAAACAATGATGAGTGAGCCCAC
AACCTTCTCAATAAAATATAAAATCCTTACTGATGAGAATTAATCACCAGTGTACTGCTG
GTAATTAATTAATTAATCTTTTGGCTGTAAATCTCCCTCCTTTCACTGATGATTCTCTCT
CTGTTCCAACCAATGGATGCAGGACTTGCACTGTGTGTCTGTCAGCTTTCAAAAACAGGG
AGAACATCATAACCTTGCCCTGCAAACATAATTACCATGCAACTTGCATCACCAAGTGGC
TCAAGATCGACAAGACCTGCCCAGTTTGCAAATATGAAGTGTTTGGACCCTCCTAACACG
TCATCAGCTGCCAATCGAAGCTCACAAGGCGGCGACACGTCATCATGCTGCTCGCTTGCC
GCATCTACTCATTCAGTACAAAAGAAAGAAAAGATGAAAAAAAAACAGATACTTAGTTGG
ATTTCACTGTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None