barSeed - Barley Seed Development Database

Probe CUST_1360_PI390587928

Source Contig U35_30062

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1360_PI390587928	Hv_44K_v2	AGGGGAAGATGGCGCTGGACATCTTCGGGAGCGAGTGGAGGCCTTCTCTGACGGTAAGCA	338	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373284	847	2e-24	377 - 436	100	60 / 60	plus	None
MLOC	MLOC_50055.2	2116	2e-24	438 - 497	100	60 / 60	minus	ABC03951
MLOC	MLOC_50055.1	2354	2e-24	551 - 610	100	60 / 60	minus	ABC03951
JLOC1	JLOC1_31980.2	2231	8e-25	1629 - 1688	100	60 / 60	plus
JLOC1	JLOC1_31980.1	2185	8e-25	1583 - 1642	100	60 / 60	plus
Harvest21	ABC29751	547	3e-25	339 - 398	100	60 / 60	plus
Harvest35	U35_30062	547	3e-25	339 - 398	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_30062 547 Hv_44K_v2
CAGCTACTCCACGGAGGCGGGGCGAACGGGAAGTGGGGTGGTGATCAGACTCAGCGCGCG
AGCACCACCGCCGCCGACCATGCCGGAATCCGACTGGGCGACCAGGCGGATCCGCAAGGA
GCTGAAGCTGCTCTGGATCGACCCTCCGGCGTTCTGCCGGCCTGGCCCGGCGCCCGTGAC
GGACCTGTTCCACTGGGAGGTGGTCATCGACGGCCCCGACGGCAGCCCCTACTCCGGCGG
CACGTTCCCCGTCGACGTCGCCTACCCCAAGGACTACCCCTTCAAGCCCATCAAGCTCAC
CTTCAAGACCAAGGTGTACCATCCGAACATCGGGCCGGAGGGGAAGATGGCGCTGGACAT
CTTCGGGAGCGAGTGGAGGCCTTCTCTGACGGTAAGCACGGCCCTCCTGTCCGTCGTCTC
CGTCCTCTACGACCCCCTGCTCGACCGCCCCGTCCGCCGGGACGCCGCCCGGCTGTACAA
GCGCGAGCGTGGTCTCTTCGAGCACAAGGCCAGGGACTGGACCCGCAGGTACGCCTCGGC
GCCGGTC

Homology of Contig U35_30062 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48910.1	235	2e-59	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi3g56650.1	213	1e-65
Arabidopsis v10	None