barSeed - Barley Seed Development Database

Probe CUST_13608_PI390587928

Source Contig U35_28313

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13608_PI390587928	Hv_44K_v2	AGAAATGATAATTCAAGTCGCTTTGGAAAGCTCATTGAAATCCATTTCAGTACGACTGGA	618	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68088.2	4019	2e-24	804 - 863	100	60 / 60	plus	ABC11854
MLOC	MLOC_68088.1	3946	2e-24	807 - 866	100	60 / 60	plus	ABC11854
JLOC1	JLOC1_45017.1	3860	8e-25	792 - 851	100	60 / 60	plus
Harvest21	ABC27114	678	3e-25	619 - 678	100	60 / 60	plus
Harvest35	U35_28313	678	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_28313 678 Hv_44K_v2
GCACCGCGCGACACCAGATGGGGTGACACCAGCTCCTACGGTGCTAAAAAGAAGCATAGA
GTTTTTTGTCAGCTTCCAAATGGTGATTGGGCCTTATGCACCGTGCTTACTACCTCTGGT
GACGAGTCTGTACTAAAGGTTTCTGAAGGAAAAGTTCTAAGACTGAAAACGGAGAGCCTC
CAACCTGCAAATCCTGAAATTCTTGATGGAGTTGATGATCTTATGCAGCTGAGTTATCTA
AGTGAACCATCCGTGCTGTACAACTTGCAGTACAGATATTCACAAGACATGATCTATACT
AAAGCAGGTCCAGTTTTGGTGGCCGTCAATCCCTTTAAGAAGGTTGCACTGTATGGTAAT
GAGTATATTAATGCATATAGAAACAAAACAATGGACAGTCCACATGTGTATGCAATAGCA
GATTCAGCGCTTCGTGAAATGAAAAGAGATGAGGTTAACCAGTCCATCATTATAAGTGGT
GAGAGTGGAGCAGGAAAAACAGAAACTGCAAAGATTGCCATGCAGTATTTGGCTTCTCTT
GGAGGTGGAAGTGGCATCGAGTATGAGATCCTACAGACCAACCCAATACTTGAGGCTTTT
GGCAATGCGAAGACATTAAGAAATGATAATTCAAGTCGCTTTGGAAAGCTCATTGAAATC
CATTTCAGTACGACTGGA

Homology of Contig U35_28313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34710.1	996	3e-91	protein\|myosin-2 heavy chain, non muscle, putative, expressed
Brachypodium v1_2	Bradi3g29440.1	1191	4e-144
Arabidopsis v10	AT1G50360.1	1153	2e-113	\| Symbols: VIIIA, ATVIIIA \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:18650688-18657106 FORWARD LENGTH=1153