barSeed - Barley Seed Development Database

Probe CUST_13607_PI390587928

Source Contig U35_499

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13607_PI390587928	Hv_44K_v2	TTGTCATTTATGCCCAGTTCGTGTAATTGTGCTCACGCCCAGCTCGTGCGTAATATATTG	659	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.852	4.650	1.383	0.620	0.190	0.211
Raw	241.579	480.691	114.627	85.840	8.466	10.945

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78122.1	682	2e-24	258 - 317	100	60 / 60	minus	ABC02670 ABC02673 ABC40934 ABC43487
JLOC1	JLOC1_52067.1	562	8e-25	138 - 197	100	60 / 60	minus
Harvest21	ABC40934	654	3e-25	41 - 100	100	60 / 60	minus	ABC40934
Harvest35	U35_499	756	3e-25	660 - 719	100	60 / 60	plus

Contig Sequence (756 bp)

>U35_499 756 Hv_44K_v2
GGTTCGATCCCCCAACGACTTCCACACCTACTCCATCCTTTGGAACCCAAAGCACATCAT
CTTCATGGTGGATGACATGCCGATCAGGGACTTCAAGAACCTGGAGGGAAAGGGGATCGC
CTTCCCCAAGAACCAGCCCATGCGGCTCTACTCCAGCCTCTGGAACGCCGACGACTGGGC
CACGCAGGGCGGCCGGGTGAAGACGGACTGGTCCCACGCGCCGTTCTCCGCCTCCTACCG
CGGCTTCAAGGCCGACGCGTGCGTGGTGACCGCGGGCGGGCGGCCTCGCTGCGGCGCCAG
CGTCGGCACGGACGTCGCCCCCGGCACCGGCGCGGCCGGCGAATGGTACAATCAGGAGCT
GGACCTGACACGGCAGCAGCGGATGCGGTGGGTGCAGAGCAACTACATGATCTATAACTA
CTGCACCGACCCCAAGCGTTTCGCTCAGGGCGTCCCCGCCGAGTGCTCCATGTAGTCCCC
ATGTCCATCCTCCATCGAGCAAGCGCGCACAGCTGCTAGCATTGCACTGTGCATAGGGCG
ATCACCTGAGCAGGACGACCGGAGCATAGGGAAGATGGGGGTGTCTGTATAAAGTGAACG
GAAATCAATAATGATTAGTGACGGGGAGATGTGTAAACTAGCCCGTGGTAAATTCTTGTT
TGTCATTTATGCCCAGTTCGTGTAATTGTGCTCACGCCCAGCTCGTGCGTAATATATTGC
CTCCTCGTGCGTTATCACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_499 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48200.1	291	7e-104	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi1g33840.1	294	2e-97
Arabidopsis v10	AT4G25810.1	286	2e-67	\| Symbols: XTR6, XTH23 \| xyloglucan endotransglycosylase 6 \| chr4:13128694-13129715 FORWARD LENGTH=286