barSeed - Barley Seed Development Database

Probe CUST_13606_PI390587928

Source Contig U35_42607

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13606_PI390587928	Hv_44K_v2	GGATCTAACTTATTTACATATTTCTTTCCTTCGTGGTGCGAGCTGCAGGGTCAGCCTAAG	378	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251119.1	1967	2e-24	1598 - 1657	100	60 / 60	plus	ABC38369
MLOC	MLOC_77459.3	2472	2e-24	1397 - 1456	100	60 / 60	plus	ABC38369
MLOC	MLOC_77459.1	2093	2e-24	1088 - 1147	100	60 / 60	plus	ABC38369
MLOC	MLOC_77459.5	2092	2e-24	1194 - 1253	100	60 / 60	plus	ABC38369
MLOC	MLOC_77459.6	2187	2e-24	1289 - 1348	100	60 / 60	plus	ABC38369
JLOC1	JLOC1_51654.3	1698	8e-25	1087 - 1146	100	60 / 60	plus
JLOC1	JLOC1_51654.2	1692	8e-25	1081 - 1140	100	60 / 60	plus
Harvest21	ABC38369	557	3e-25	379 - 438	100	60 / 60	minus	ABC38369
Harvest35	U35_42607	557	3e-25	379 - 438	100	60 / 60	minus

Contig Sequence (557 bp)

>U35_42607 557 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGTTGTATATCTTTCATTTCAATAGCACATCACATGAATTACA
ATACATCATCCATCGACTCCTCTACACATAAAGGTTCAAGGCCCAACAAGTGCACAACAA
AATAGTTCTACAAGTGGAGGTGTACAGCAAAAGGGTGCAACAAATGCATAATCACACATC
ATCATACTTCAACACATTACATCAATGATAAACGAAGCTTCTTGTTCCCTCCTCCTGTCC
TGTCCTCTACTTCTTCTGGGTGCTTCAGATCATCTCGATGACCATAACCGGCTCGAGCCG
ATGACCACCGGCTCGACGGCCACCGCGTTGGCAACCGTGTAAGAATGCTGAACCCCGATC
ACGTCAAGTTCGTGGAGGCTTAGGCTGACCCTGCAGCTCGCACCACGAAGGAAAGAAATA
TGTAAATAAGTTAGATCCTTGCTCATGTCTTACAAATAGCTGCTAGAATAAATACTTCAA
AGCACTCTTGTTTAGAAAGTGGATTCATTCCCAAATATAGATAGAGAAAGTACACATGAA
GGTTTATATGTCACCGG

Homology of Contig U35_42607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None