barSeed - Barley Seed Development Database

Probe CUST_135_PI390587928

Source Contig U35_45889

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_135_PI390587928	Hv_44K_v2	TCTATCGATTGGGATTATCAGGCAATGTCACTTATGAAGGATGACTCATGCTCATGGGAC	343	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.989	1.589	1.353	0.915	0.415	0.335
Raw	20.466	50.798	37.090	42.845	5.703	4.464

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23216.4	729	2e-24	70 - 129	100	60 / 60	plus	None
MLOC	MLOC_23216.5	810	2e-24	70 - 129	100	60 / 60	plus	None
MLOC	MLOC_23216.3	1035	2e-24	419 - 478	100	60 / 60	plus	None
JLOC1	JLOC1_16056.1	823	8e-25	197 - 256	100	60 / 60	plus
Harvest21	ABC45266	403	3e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_45889	403	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (403 bp)

>U35_45889 403 Hv_44K_v2
CGTCCGGAGCCCCTCGCTGCCTCGCACCGTGCGCCAGCGCCAGGGCCACAGTATAGACGC
CTCCAACAGCGGCGTAGTCGCCGGCTCCGGCGCTGCAGACGACGCCTTCCCTCTCGTCCA
CCCTCCTCCGATGAGCGACGATGCCACGCTACTCCGCGGCCACCTCCATGACTCGCCGCA
TCAGGTCAAGGAGCGAAGAGCTAAACTTCTGGGGAGGCGAGACCAACTTTGTTGGTATTA
TCAATATCTGAGACAAGTTGTTCACAATGAGCAGCTGAGAATTGAACTTCAAAGTTTGAT
GTGTGAGCTGGAGGCCGAAGGTTTTTTCAGCATTGCCGATGATTCTATCGATTGGGATTA
TCAGGCAATGTCACTTATGAAGGATGACTCATGCTCATGGGAC

Homology of Contig U35_45889 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None