- Probe CUST_1359_PI390587928
- Source Contig U35_30063
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1359_PI390587928 | Hv_44K_v2 | TCATGTCCAACAATGGATAATGTAGGTCAAGTAATGAAACCTTCTTATGGTATGCATGTA | 251 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.566 | 2.437 | 2.944 | 0.949 | 0.258 | 0.292 |
| Raw | 5567.867 | 13725.577 | 13685.300 | 6663.020 | 687.801 | 839.380 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_46337.3 | 477 | 8e-25 | 403 - 462 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29752 | 368 | 3e-25 | 252 - 311 | 100 | 60 / 60 | plus | ABC29752 |
| Harvest35 | U35_30063 | 368 | 3e-25 | 252 - 311 | 100 | 60 / 60 | plus |
Contig Sequence (368 bp)
>U35_30063 368 Hv_44K_v2 CTAGTCTAATGGAAGGCAAAGCTATTCTTCTTTGCCTCATGGTGATTGTGCAGCTCGGAA ATTCCATTCATGTTGAGCAATGTTTTAGTGGAGTTGCATTTGGAGCTCATGTATGTAGGG AATCACAATGTCGGTTGTCCTGCGAGCAAAAATGGGGAAAAGATATCCTGAATTCTTTCT GTAGGGTCGATATCCCAAACTATCTCCATTGTTACTGCATAGTCTGTATCACCTAGAGTT GCACTATGAAGTCATGTCCAACAATGGATAATGTAGGTCAAGTAATGAAACCTTCTTATG GTATGCATGTAATATCCAACAATGGAATTATTTAGGTGTTCTTGATATATCAAAAAAAAA AAAAAAAA
Homology of Contig U35_30063 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |