barSeed - Barley Seed Development Database

Probe CUST_13590_PI390587928

Source Contig U35_16344

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13590_PI390587928	Hv_44K_v2	CAAGCGTTTTTTATTTGCTACATTTGTTCAGTAAAAAAGCTGGCATATACGTTTGGTTGC	1393	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.012	2.145	1.200	0.813	0.506	0.547
Raw	79.765	129.643	65.429	65.899	15.207	18.132

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355415	1820	3e-22	1756 - 1814	98	59 / 60	plus	ABC05030
MLOC	AK358524	2189	3e-22	2131 - 2189	98	59 / 60	plus	ABC05030
Harvest21	ABC05030	1452	3e-25	18 - 77	100	60 / 60	minus	ABC05030
Harvest35	U35_16344	1470	3e-25	1394 - 1453	100	60 / 60	plus

Contig Sequence (1470 bp)

>U35_16344 1470 Hv_44K_v2
TGCAAGAGCGCCAAAGAGCAAGGAGGGTTATGCATCCATAGGTGGTGGTTCACCTCTTCG
ACAAATTACTGATGCGCAGGGAGAAGCACTTATGGAGGCATTATGTGGAAAGGATATCCC
TGCTAAGGTATACGTCGGAATGCGGTATTGGCATCCCTTCACCGAGGAAGCTATAGAACA
AATAAAAAAGGATGGAATCACAAAACTTGTTGTACTACCTCTTTACCCCCAGTTCTCCAT
ATCGACCAGTGGTTCAAGTCTCCGTCTTCTGGAGAGCATATTCAGGGAGGATGAGTATCT
GGTCAATATGCAACATACGGTTATTCCTTCTTGGTATCAGCGTGAAGGATATATTAAGGC
CATGGCAACTTTGATCGAGAAGGAGTTGTTAAAATTTCCAAAACCGCAGAAGGTTATGAT
ATTTTTCAGTGCTCATGGAGTTCCTCTGGCATACGTTGAAGAAGCTGGTGATCCGTATAA
AGCAGAGATGGAAGAGTGCGTGGATCTTATCATGGAGGAGCTCGAAAAAAGAGGAATGGA
AAATCCATGTACACTTGCTTATCAGAGCCGAGTGGGACCAGTGGAATGGCTGAAACCCTA
CACTGACGAGACAATTATTGCTCTTGGGCAGAGAGGGGTAAAGAGCCTTCTAGCAGTTCC
CATAAGTTTTGTCAGCGAACACATTGAGACATTGGAAGAAATCGACGTGGAGTACAAGGA
GCTGGCTTTACAATCTGGTATAAAGCACTGGGGACGAGTTCCTGCTTTAGGTTGTGAGCC
CACATTCATTTCAGATCTTGCGGATGCTGTTATTGAAAGCCTGCCTTATGTTGGCGCAAT
GGCAGTTTCCAACCTTGAGGCTCGGCAGTCACTGGTGCCACTTGGAAGCGTGGAGGAGCT
GCTAGCAGCGTACGACTCGAAGCGCGACATGCTGCCTCCTCCGGTGATTGTGTGGGAGTG
GGGCTGGACGAAGAGTGCCGAGACATGGAATGGACGTGCTGCTATGCTGGCCGTGTTGGC
TCTCCTGGTGCTGGAGGTAACAACCGGACAGGGGCTCTTGCACCAGTGGGGTATCTTGCC
ACCTCTCCCTTGATAAGCGGGGATGGATGGATGGATTTCAGGTCTCCCCTTGAGGGGATC
TGATGGTAATTTTGGTTCATTTGGGAATGTCCTGATGCTATATATGATGATGGATCGATT
TGCCTTACGCCAAGAAAGGAAAGTATGGACTGAATTTACCGGTGTAAATATGCTAGACTC
AAGAGAGCTTTACAATAGGTAAACGTTTCTGGCCGGTGCGCCGGCCGAACCGTTCGGCCG
GCCACGCAAATCGCTGATTAGGCATACAATTTTTTTCGTCTAAATTTGTTGCAACTAACG
CTCATATTTGCTACAAGCGTTTTTTATTTGCTACATTTGTTCAGTAAAAAAGCTGGCATA
TACGTTTGGTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16344 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g29760.3	393	protein\|ferrochelatase-2, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g62550.1	507
Arabidopsis v10	AT2G30390.2	522	\| Symbols: FC2 \| ferrochelatase 2 \| chr2:12951242-12953985 REVERSE LENGTH=522