barSeed - Barley Seed Development Database

Probe CUST_13588_PI390587928

Source Contig U35_16345

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13588_PI390587928	Hv_44K_v2	TGTCCAGCCTTTCTTGTTTAATCTTTTTGCTGATCCCGATATCATCCGTCTTCCTAGGGC	571	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355415	1820	2e-24	546 - 605	100	60 / 60	plus	ABC05030
MLOC	AK358524	2189	2e-24	624 - 683	100	60 / 60	plus	ABC05030
MLOC	MLOC_39397.1	967	2e-24	121 - 180	100	60 / 60	minus	None
JLOC1	JLOC1_25683.1	1087	8e-25	782 - 841	100	60 / 60	plus
Harvest21	ABC05031	1250	3e-25	572 - 631	100	60 / 60	plus
Harvest35	U35_16345	1250	3e-25	572 - 631	100	60 / 60	plus

Contig Sequence (1250 bp)

>U35_16345 1250 Hv_44K_v2
CCACTTTGTCCCTCCGCTTCTTCCCCCGAAGCCCGAATCCTCCCCGGCCCCCGGGGTCAT
AAACACGGACCTCAAACGAGTTCTCTTCTACCTCCGCGCTTCCTCGGATTTGATTTCGCT
CGTTGCGGATTTGCCTCCTGGCTGAGTACTAATTCCTCCCGGTTTACCAACAAATTTGGA
TATCCATGCTCCACGTTAGGCTCGCTCCTGGGCCTGCACCGCGTAATTTATCTAGGAGAT
GGGATTCCAGCGCATGCCTACATAGCTGGTGTTCCGTTCCTTGTCCAAGCAGGCTCAATC
TCTCGAGGACATATTCAATTAAATCTTCTTCGGTTGGTAGCGCCACAGGACTTTGTCTTG
GACAATGTTGCCGCATCAAGCCTTTGTCCTGCAAATGCAAGCTAGGTTGGTCTTCTCAGC
CGCCACCCGACTCGAGGCAACATTTTAGTGCATCTTCATCCGCATCAGAGGCGATTCTCA
CTGCACAGTCCGATATCCAGAAACTTTTTGTCGCCAATGAGAAAATTGGCGTTCTGCTGC
TAAATCTTGGAGGCCCAGAGACCCTTGATGATGTCCAGCCTTTCTTGTTTAATCTTTTTG
CTGATCCCGATATCATCCGTCTTCCTAGGGCGCTCCGCTTTCTGCAGAAGCCGCTAGCAC
AATTCATTTCTGTTGCAAGAGCGCCAAAGAGCAAGGAGGGTTATGCATCCATAGGTGGTG
GTTCACCTCTTCGACAAATTACTGATGCGCAGGGAGAAGCACTTATGGAGGCATTATGTG
GAAAGGATATCCCTGCTAAGATAAAAAAGGATGGAATCACAAAACTTGTTGTACTACCTC
TTTACCCCCAGTTCTCCATATCGACCAGTGGTTCAAGTCTCCGTCTTCTGGAGAGCATAT
TCAGGGAGGATGAGTATCTGGTCAATATGCAACATACGGTTATTCCTTCTTGGTATCAGC
GTGAAGGATATATTAAGGCCATGGCAACTTTGATCGAGAAGGAGTTGTTAAAATTTCCAA
AACCGCAGAAGGTTATGATATTTTTCAGTGCTCATGGAGTTCCTCTGGCATACGTTGAAG
AAGCTGGTGATCCGTATAAAGCAGAGATGGAAGAGTGCGTGGATCTTATCATGGAGGAGC
TCGAAAAAAGAGGAATGGAAAATCCATGTACACTTGCTTATCAGAGCCGAGTGGGACCAG
TGGAATGGCTGAAACCCTACACTGACGAGACAATTATTGCTCTTGGGCAG

Homology of Contig U35_16345 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g29760.1	527	0.0	protein\|ferrochelatase-2, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g62550.1	507	0.0
Arabidopsis v10	AT2G30390.2	522	2e-131	\| Symbols: FC2 \| ferrochelatase 2 \| chr2:12951242-12953985 REVERSE LENGTH=522