barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13583_PI390587928Hv_44K_v2ATGGTCTGGTTTGTAGTAGTAGTAGTGTATGCTTAACTTATCTGATATTGGTGATTGTGA1941GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6501.1662.0431.8060.7800.755
Raw 1830.5635240.1337891.00310732.0931656.6001754.996



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_75709.544852e-244388 - 444710060 / 60plus ABC04949
MLOCMLOC_75709.642972e-244148 - 420710060 / 60plus ABC04949
MLOCMLOC_75709.250742e-244912 - 497110060 / 60plus ABC04949
MLOCMLOC_75709.449692e-244820 - 487910060 / 60plus ABC04949
JLOC1JLOC1_50496.148578e-254699 - 475810060 / 60plus
Harvest21ABC0494920463e-251942 - 200110060 / 60plusABC04949
Harvest35U35_1634820753e-251942 - 200110060 / 60plus



Contig Sequence (2075 bp)

>U35_16348 2075 Hv_44K_v2
GCATGATGGTGTGAGGTATCCAACAATACTTGGTGTAAGAGAACATATATTCACTGGCAG
TGTTTCTTCGCTTGCGTGGTTCATGTCAAACCAAGAGACAAGTTTTGTGACTATTGGACA
GCGTGTACTTGCCAATCCTTTAAGGGTTCGATTTCATTATGGACATCCTGATATCTTTGA
TCGACTCTTCCATCTCACAAGGGGTGGTGTAAGCAAAGCATCTAAGATTATCAATCTTAG
TGAGGACATATTTGCTGGATTCAATTCAACACTGCGTGAAGGAAACGTTACACATCATGA
ATACATGCAAGTTGGCAAGGGAAGAGATGTTGGTCTCAATCAGATTTCACTATTTGAGGC
GAAGATAGCATATGGTAACGGCGAACAGACTCTGAGCCGTGACATCTACCGACTTGGCCA
TCGTTTTGATTTCTTCAGAATGTTGTCCTGCTACTATACTACCATTGGCTTTTACTTCAG
CACAATGATTACGGTATGGACCGTGTATGTATTCCTCTATGGGCGTTTGTATCTCGTCCT
CAGTGGCCTCGATGAAGGACTAGCCACAGGAAGAAGGTTTATACACAACAACCCTCTCCA
AGTCGCTCTTGCCTCACAGTCGTTTGTGCAGCTTGGCTTCTTGATGGCACTCCCTATGAT
GATGGAGATTGGTCTGGAGAGAGGGTTCAGGACCGCATTGAGCGACTTTGTGCTGATGCA
GCTTCAGTTAGCATCCGTCTTCTTCACATTCTCCCTCGGAACCAAGACTCACTACTACGG
AAAGACGCTGCTACATGGAGGAGCTGAGTATAGAGCTACTGGACGTGGATTCGTGGTGTT
CCATGCCAAGTTCGCCGAGAACTATCGGCTGTACTCGCGGAGCCATTTCGTCAAGGGCAT
CGAGTTGATGATCTTGCTTATCGTGTTTGAGATCTTCGGGCAGTCGTACCGAGGAGCCAT
CGCGTACATCTTCATAACCTTCTCCATGTGGTTCATGGTCGTTACCTGGCTCTTTGCGCC
GTTCCTGTTCAACCCTTCTGGGTTCGAGTGGCAGAAGATTGTGGATGACTGGACTGACTG
GAACAAGTGGATCAGCAACCGCGGGGGTATCGGTGTTTCGCCGGAGAAAAGTTGGGAGTC
ATGGTGGGAGAAAGAGCACGAGCCCCTGAAATACTCCGGGAAGCGTGGCACCGTTCTTGA
GATAGTGCTTGCCGTGCGCTTCTTCATCTACCAGTATGGGCTCGTTTACCATCTCAACAT
AACCAAACACACCAAGAGCGTCCTGGTTTATTGCTTGTCATGGGTTGTCATCTTCTTCAT
ATTGCTGGTGATGAAGGCTGTGTCGGTCGGTCGGCGGAAATTCAGCGCGGAGTTCCAGCT
CGTGTTCCGGCTGCTCAAGGGGCTGATCTTCATCGTGTTCATCTCCACCATCGTGATCCT
TATCGTGATCCCCCACATGACGATCCAGGACATATTCGTCTGCATCCTTGCCTTCATGCC
AACGGGATGGGGCCTGCTCCTCGTGGCTCAGGCACTGAAGCCGGCGATCATGAGGGTGGG
GCTGTGGGGGTCGATCCGGGCTCTAGCTCGTGGGTACGAGATCATCATGGGGCTGCTGCT
CTTCACCCCGATCGCGTTCCTGGCGTGGTTCCCGTTCGTGTCTGAGTTCCAGACTCGGAT
GCTCTTCAACCAGGCCTTCAGCCGTGGTCTGCAGATCTCGAGGATCCTGGGTGGGCACAA
GAAGGACCGGGCGGCGCGGAGCAAGGACGATAGGTAGATGGATAGATTGCCGTCGTAGCT
AGTAGTAAGGTAGATAGACGATTGTAGGCATGCTGGATGGCTGTAGCGGTTGTGGCTTGT
CAGTAGTATGTATGTATGTATTCCAGGCTGCAAATTGCATTGGCAATGTAGTAGTAGTGC
ACAAGATAATCATATGGATGCATGGTCTGGTTTGTAGTAGTAGTAGTGTATGCTTAACTT
ATCTGATATTGGTGATTGTGACTTATAACTTGTGTACTTTATTAATTATAACCTATCTGA
TATTGGTGATTGTGACTTAAAAAAAAAAAAAAAAA



Homology of Contig U35_16348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g58560.37770.0protein|1,3-beta-glucan synthase component, putative, expressed
Brachypodium v1_2Bradi3g60790.219560.0
Arabidopsis v10AT5G13000.119550.0| Symbols: ATGSL12, gsl12 | glucan synthase-like 12 | chr5:4110445-4121202 REVERSE LENGTH=1955