barSeed - Barley Seed Development Database

Probe CUST_13577_PI390587928

Source Contig U35_42614

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13577_PI390587928	Hv_44K_v2	ATATGCATAAAAACACTGGCTCATCGTCAGCGTTTTTACCTCCTACCCTGAAGGATCCAC	460	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22116.8	1492	2e-24	389 - 448	100	60 / 60	plus	ABC09006 ABC38381
MLOC	MLOC_22116.6	1518	2e-24	415 - 474	100	60 / 60	plus	ABC09006 ABC38381
JLOC1	JLOC1_15330.2	1493	8e-25	388 - 447	100	60 / 60	plus
JLOC1	JLOC1_15330.1	1556	8e-25	451 - 510	100	60 / 60	plus
Harvest21	ABC38380	606	3e-25	461 - 520	100	60 / 60	plus
Harvest35	U35_42614	606	3e-25	461 - 520	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_42614 606 Hv_44K_v2
GATAGACTGCCCCTGCCATCGGCCGCGCCCCACCAACGTCGGGCCTCCTCTCCTGCCCCG
TCATCGCCGGGGAGCGGACGCTCCACCACCGCCCCAACCCCCGCCATCATCGCCCCGCCG
CCGCCTTGCACCCGCGCCATGTCACCATCATCCAGCCAACACCGGTCGCGGCCCCACCAA
CCCCAGGCCTCCTCTCTCGCCATGTCACCGTCCTGGAGCGGACGCCCCGCCATCGGCTGC
GCTCCACCATCGGCAGCCCAATGGCATCCAGGCTCGAGACATTGAGTTGCATCAATGCTT
GGGTTGTCGAGGATGAAATGGGAGGCGTAATCTTCCCAAGCCATCAGGCATCGAGTTGCA
GTGATGCTTGGTTTGTCGAGGATAAAGTGGGAGGTGTCATGTGCCCAATCCATAGGTGGC
AAGGATCATTGGATTGTGAACAATTCATTGGATTGTGAACATATGCATAAAAACACTGGC
TCATCGTCAGCGTTTTTACCTCCTACCCTGAAGGATCCACCTGTTGTTGCTCCTGGCGTG
CCTTGGGATTCCGCCTTTCCTGGAGCTCCTGTGAACTGGATAATGCAGTTTGCGCCAGCG
ATAACC

Homology of Contig U35_42614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None