- Probe CUST_13576_PI390587928
- Source Contig U35_28321
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13576_PI390587928 | Hv_44K_v2 | TATTCCGCCGGTGCCAAGCTTATTCACATTTAAAATTGCAGACAAGCGACTGGCTGATCT | 604 | GeneList: ivory MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.230 | 0.863 | 1.500 | 1.377 | 0.883 | 0.872 |
| Raw | 74.572 | 75.571 | 124.421 | 166.496 | 39.627 | 43.956 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61023.1 | 1737 | 2e-24 | 758 - 817 | 100 | 60 / 60 | plus | ABC15405 ABC15406 |
| MLOC | MLOC_61023.2 | 1784 | 2e-24 | 890 - 949 | 100 | 60 / 60 | minus | ABC15405 ABC15406 |
| MLOC | MLOC_61023.3 | 1687 | 2e-24 | 875 - 934 | 100 | 60 / 60 | minus | ABC15405 ABC15406 |
| MLOC | MLOC_61023.4 | 2188 | 2e-24 | 1367 - 1426 | 100 | 60 / 60 | minus | ABC15405 ABC15406 |
| MLOC | MLOC_61023.5 | 990 | 2e-24 | 351 - 410 | 100 | 60 / 60 | minus | ABC15406 |
| MLOC | MLOC_61021.6 | 4934 | 2e-24 | 4213 - 4272 | 100 | 60 / 60 | minus | ABC13102 ABC15405 ABC15406 |
| JLOC1 | JLOC1_39837.3 | 1559 | 8e-25 | 547 - 606 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39837.2 | 1569 | 8e-25 | 557 - 616 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39837.1 | 1577 | 8e-25 | 565 - 624 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27128 | 664 | 3e-25 | 605 - 664 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28321 | 664 | 3e-25 | 605 - 664 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20603 | 1538 | 3e-25 | 506 - 565 | 100 | 60 / 60 | plus |
Contig Sequence (664 bp)
>U35_28321 664 Hv_44K_v2 GCGCCTCGGCGCCCTCCGGCCACGCCCGCGAGCAGGAGGACGAGCAGTCGCTGGTGGTGG TGGGCGGAGGCGCCGCAGGGGTGTACGCGTCCATAAGGGCCAAGACCCTGGCTCCCCACC TCAACGTGGTGGTCGTCGAGAAAGGCAAGTTCTTGTCCAAGGTCAAGATCTCCGGCGGCG GGCGGTGCAACGTCACCAACGGGCACCATCTCGAGCCGTCGGGGCTGGCGAGAAATTATC CTAGGGGGCACAAGGAACTCCGGGGATCGTTCTTTCGCAGTCATGGGCCACAGGATACCA TGCACTGGTTCTCAGATCATGGTGTGGAGCTTAAGACCGAAGATGACGGTAGAGTCTTTC CTGTCACTGACAACTCTGCATCGGTAGTAGACTGCCTGCTGAACGAGGCGAGAAGACTGG GAGTTTCCCTGCAGGCTGGTAAATCGGTGTCCGGTGCATCCGTCGATGACAACGGGAAGT TTGTTGTGGAAGTTGAGAAGCGTACCATTGATTTTGTCGATTACATCAGCGCTAATTATG TCTTGGTTGCTACAGGGAGCAGCCAGCAGGGCTACTCATTTGCTGCACATTATGGTCACT CTATTATTCCGCCGGTGCCAAGCTTATTCACATTTAAAATTGCAGACAAGCGACTGGCTG ATCT
Homology of Contig U35_28321 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g44160.2 | 359 | 7e-87 | protein|oxidoreductase, putative, expressed |
| Brachypodium v1_2 | Bradi4g00497.1 | 428 | 1e-95 | |
| Arabidopsis v10 | AT5G39940.1 | 480 | 1e-85 | FAD/NAD(P)-binding oxidoreductase family protein | chr5:15987649-15990561 FORWARD LENGTH=480 |