barSeed - Barley Seed Development Database

Probe CUST_13575_PI390587928

Source Contig U35_42615

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13575_PI390587928	Hv_44K_v2	GCATGTTAAACATTGCCCGATATGTTTACCCCTACATGTATTACTTAAAGGAACTAAGTT	25	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376020	4002	7e-23	3859 - 3918	98	59 / 60	plus	ABC09006 ABC38381
MLOC	AK370042	2014	7e-23	1947 - 2006	98	59 / 60	plus	ABC09006 ABC38381
MLOC	MLOC_62802.1	1925	7e-23	1362 - 1421	98	59 / 60	plus	ABC38381
JLOC1	JLOC1_41121.2	2132	4e-23	1728 - 1787	98	59 / 60	plus
JLOC1	JLOC1_41121.1	1285	4e-23	1039 - 1098	98	59 / 60	plus
Harvest21	ABC38381	530	3e-25	26 - 85	100	60 / 60	minus	ABC38381
Harvest35	U35_42615	530	3e-25	26 - 85	100	60 / 60	minus

Contig Sequence (530 bp)

>U35_42615 530 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTAAAAATAACTTAGTTCCTTTAAGTAATACATGTAGGGGTAA
ACATATCGGGCAATGTTTAACATGCAAAATAAATAAAAAGGGAAGTCTTTTTTTCTTCTT
GAAAATATTCATCATCTTCCAAAAAAATGGCATCCTCTGTTTACAAAAAATATTGGGGCC
GAAGTTGACTTAATGAAAAATGTTCTTGGAATGAAACCGGGATGTTCTTTAGGGGACTTC
TCGAAAACTTGTAAATAGTCTAACCATTTTTTTCTTCTACTTGAAAAACAGGGATGATGT
TAAACTGAAGTGCTCATATAGCATATCCAGCATCTGCTTGTCTCTGGGATCCGCCCCTTC
TTTGTATGCTCACTGACCCAACAATTCCAACAAACCATTCCAAGAGGGAACCTTGGAAAA
AGCTTGCTTCCTCTTGATTCCTTCTATACTTGAAAAATTGCCATTACCCTTCAAGCAACG
CCCCCTAGCCGTGTCACGTATAGGATAGTCATGGGGGCAACAAAAACGGT

Homology of Contig U35_42615 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None