barSeed - Barley Seed Development Database

Probe CUST_13571_PI390587928

Source Contig U35_42617

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13571_PI390587928	Hv_44K_v2	TTTTTGATCATGTAGCCCCATCGCTAGTTGAGCTCACTGATGCGATCAAGAATGAGTCCA	535	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.854	1.556	1.419	0.769	0.365	0.217
Raw	123.820	138.296	131.140	108.285	19.566	11.855

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7870.1	315	2e-24	171 - 230	100	60 / 60	minus	None
JLOC1	JLOC1_5207.1	307	8e-25	165 - 224	100	60 / 60	minus
Harvest21	ABC38389	669	3e-25	536 - 595	100	60 / 60	plus
Harvest35	U35_42617	669	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (669 bp)

>U35_42617 669 Hv_44K_v2
GGGACCACACATGCGCATCCGGCACCAAATGCGACTACCCGTGCTTCCGGACGGACACCA
TGACCACCGGTGTGACGTCAAGAAGCCACAGAGGAGCAGGAACTCCACCCCCAAGCTCAA
GCCAAGAAGACTACTCTAATGAGGGCGGCACACCAGCAAGCTCAAGCCAAAGAGGCTTCC
ACACAAGGTTCTAGACATCACTGCCCATTTGGAACACCAACAAGTGCAGACTCAAGCCTC
CTTTGACAGTATCAAAGGTGAGCTTGTGAAGCTCACATCGATGGTTTCACAACTTGCAGT
CTCCCTTAGCAAGCAGCCATGTGCGCCTGACAACGGCTCACTGGAACAATCTCAAACCTC
TGGCACGGGATCATGTCCTGGCTGCGCCTCCCGACTCCGGTGCCTGACCAGGACGCCACG
CTACAGGACTGGTGGCTCAGGGCTCGCGATGCCACGCCACCCCCGCTCCGCAAAGCACTG
GCCTCGGTTGCGCTCCTTGTGCCTTGGATGATCTCGAAGCATAGGAATGCGTGTGTTTTT
GATCATGTAGCCCCATCGCTAGTTGAGCTCACTGATGCGATCAAGAATGAGTCCAGGAGT
TGGGCTAAGGCAGGGGCCAAAGGGCTTAGGGTCACCCTGCCATCCTCCTGGGACGTTAAC
TGATCCTCT

Homology of Contig U35_42617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None