- Probe CUST_1356_PI390587928
- Source Contig U35_30066
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1356_PI390587928 | Hv_44K_v2 | AATTGAACTGTGATGATGGACTTGTAGTAAGTAAGTACTCCTACGTACTTAAGTAAATGG | 404 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.049 | 0.086 | 0.946 | 2.169 | 1.308 | 1.138 |
| Raw | 111.083 | 304.249 | 3007.907 | 10210.107 | 2264.457 | 2140.927 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69487.1 | 4216 | 7e-23 | 48 - 107 | 98 | 59 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.2 | 4294 | 7e-23 | 48 - 107 | 98 | 59 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.8 | 4326 | 7e-23 | 21 - 80 | 98 | 59 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.7 | 2269 | 7e-23 | 21 - 80 | 98 | 59 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.4 | 4182 | 7e-23 | 29 - 88 | 98 | 59 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.5 | 4206 | 7e-23 | 29 - 88 | 98 | 59 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.6 | 3778 | 7e-23 | 27 - 86 | 98 | 59 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.3 | 4445 | 7e-23 | 48 - 107 | 98 | 59 / 60 | minus | ABC29759 |
| JLOC1 | JLOC1_46040.2 | 3686 | 4e-23 | 3580 - 3639 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_46040.1 | 3698 | 4e-23 | 3592 - 3651 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC29759 | 487 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus | ABC29759 |
| Harvest35 | U35_30066 | 487 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus |
Contig Sequence (487 bp)
>U35_30066 487 Hv_44K_v2 GGCTTACTACATCATCGGGCTGCCGATCGGATGCGTCCTAGGGTTCAAAACAAGCCTCGA GGCAGCTGGGATCTGGTGGGGCTTGATCATAGGGGTGGTGGTGCAGACGGTGGCTCTGAT CGTCATCACGGCCAGGACCAACTGGGACAGCGAGGTGGAGAAGGCGCAGCAGCGGCTGCG GCGCACCGCGGTGGACGAGGGCGGCGTGTTGGTGATCGCCGCCGTCGACGACGACGACGT CTGATGACCCGGGCGGGGGAGAGGTGTCTGGGGGCTACTCTGTTTGGTGGCCATTGTTTG TTTGGTAGGAGCACTCTCCAGGACCAGGAGAGAGGGAGTAGTTGCTAGGTGCCCAACTTT TATTATCAAGTGGCTATATATAGTGCCTTTGGGTTTGTGCAATTAATTGAACTGTGATGA TGGACTTGTAGTAAGTAAGTACTCCTACGTACTTAAGTAAATGGTTAATTAAAAAAAAAA AAAAAAA
Homology of Contig U35_30066 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |