barSeed - Barley Seed Development Database

Probe CUST_13568_PI390587928

Source Contig U35_28325

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13568_PI390587928	Hv_44K_v2	TGAATCTGGCATATTCCGTTCTGTTCTCAAAGCTGACCCCAGTTATAATGAGGCACCTTG	566	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.820	1.474	2.234	1.941	0.573	0.380
Raw	21.838	58.504	81.288	114.673	11.512	8.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375226	2361	2e-24	1222 - 1281	100	60 / 60	plus	ABC49838
MLOC	MLOC_51294.3	1574	2e-24	1014 - 1073	100	60 / 60	minus	ABC49838
MLOC	MLOC_51294.1	2085	2e-24	1113 - 1172	100	60 / 60	minus	ABC49838
MLOC	MLOC_51294.2	1991	2e-24	1101 - 1160	100	60 / 60	minus	ABC49838
JLOC1	JLOC1_32756.1	2075	8e-25	833 - 892	100	60 / 60	plus
Harvest21	ABC27136	653	3e-25	567 - 626	100	60 / 60	plus
Harvest35	U35_28325	653	3e-25	567 - 626	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_28325 653 Hv_44K_v2
NCAGGNAGGGGGCGCGCAGGGGGACGCCGTCGCCGTCAGGTCATCCCCAAGGCCAAGATG
ACAACATCCATTGCTATAGAGGATGTCCGGAGGGAGGTGAAAATTTTGAAGGCTTTGGCT
GGACACAAGAACTTGGTTCAGTTTTATGATGCATATGAGGACAACGAAAATGTCTACATA
GTCATGGAGTTGTGCGAGGGCGGGGAGCTTCTGGATAGAATACTTTCCAGAGGTGGAAAG
TACTCCGAGGATGATGCAAAGTCTGTCCTGGTGCAAATATTGAATGTTGTTGCTTTTTGC
CACATTCAAGGAGTGGTTCATAGGGATCTCAAACCAGAGAATTTTCTTTTTACTTCTAAA
GATGAGAACTCTCAACTTAAGACGATTGACTTCGGATTATCAGATTTTGTAAAACCAGAT
GAGAGACTAAATGATATTGTTGGAAGTGCTTATTATGTTGCTCCGGAAGTTCTGCATAGA
TGCTATAGCACAGAAGCGGATGTCTGGAGTATAGGTGTCATTGCATATATCCTCCTTTGT
GGCAGCCGCCCTTTTTGGGCACGCACTGAATCTGGCATATTCCGTTCTGTTCTCAAAGCT
GACCCCAGTTATAATGAGGCACCTTGGCCTTCACTCACTCCAGAAGCAATGGA

Homology of Contig U35_28325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42770.1	454	7e-140	protein\|CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g21110.1	602	8e-141
Arabidopsis v10	AT3G19100.1	599	4e-124	Protein kinase superfamily protein \| chr3:6605681-6608980 FORWARD LENGTH=599