barSeed - Barley Seed Development Database

Probe CUST_13558_PI390587928

Source Contig U35_30644

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13558_PI390587928	Hv_44K_v2	TTGTGTACGTGAACTTCGGGAGCGTGACCGTGATGAGCAGCCACGACCTGGCGGAGTTCG	44	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.445	0.371	0.790	2.192	1.746	2.067
Raw	3.056	2.867	12.379	53.533	14.009	19.599

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358124	1754	2e-24	988 - 1047	100	60 / 60	plus	ABC37155
MLOC	MLOC_74220.1	1722	2e-24	1083 - 1142	100	60 / 60	plus	ABC37155
MLOC	MLOC_74220.2	1832	2e-24	1193 - 1252	100	60 / 60	plus	ABC37155
JLOC1	JLOC1_49455.1	2080	8e-25	1127 - 1186	100	60 / 60	plus
Harvest21	ABC30649	570	3e-25	45 - 104	100	60 / 60	plus
Harvest35	U35_30644	570	3e-25	45 - 104	100	60 / 60	plus
Harvest35	U35_17648	861	3e-25	31 - 90	100	60 / 60	plus

Contig Sequence (570 bp)

>U35_30644 570 Hv_44K_v2
CCAAACCTGCCTGCGGTGGCTCGACGGCAAGAGGCGCCGATCTGTTGTGTACGTGAACTT
CGGGAGCGTGACCGTGATGAGCAGCCACGACCTGGCGGAGTTCGCGTGGGGGCTGGCCAA
CAGCGGCCAGGAGTTCCTCTGGATCGTCAGGCCGGACGTCGTGAAGAGCAGCGAGCTCGC
CGGCGCCGCGCTGCCCCCCGGGTTCCTGGAGGCGACCAGGGGCAGGGGGCTCGTGGCGAG
CTGGTGCGACCAGGAGGCGGTGCTGCGGCACGACGCCGTGTGCGTGTTCCTGACGCACAG
CGGGTGGAACTCGACGGTGGAGGCCCTCTGCGGCGGCGTGCCGATGCTGTGCTGGCCCTT
CTTCGCGGAGCAGCAGACCAACTGCCGGTACAAGTGCGTCGAGTGGGGGGTGGCGATGGA
GATCGGCGACGACGTGCGGCGGGAGGCGGTCGAGGGGAGGATCAAGGAGGCGGTGGCCGG
CGACAAGGGCAGGGAGATGAGGGAGAGAGCGGACGAGTGGACGGAGGCGGCTGTCCGCTC
CACGGCGAGATCGTTGACCAATCTTGATTC

Homology of Contig U35_30644 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36840.1	494	4e-100	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi3g46870.1	312	9e-107
Arabidopsis v10	AT1G22370.2	479	6e-73	\| Symbols: AtUGT85A5, UGT85A5 \| UDP-glucosyl transferase 85A5 \| chr1:7898116-7899879 REVERSE LENGTH=479