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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13553_PI390587928Hv_44K_v2ACGAGAATTATTCGGTAATCAAACCGCATCCTCTTGCAAGGTTGTGTTTGTGATAAAAAA983GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6601.7171.0070.9050.3920.479
Raw 1554.0372513.0561283.2801829.772280.668364.859



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC067238163e-2512 - 7110060 / 60minusABC06723
Harvest35U35_1635310543e-25984 - 104310060 / 60plus



Contig Sequence (1054 bp)

>U35_16353 1054 Hv_44K_v2
GCACGCGGGATTACCACGGTGGGTTTTCTTGGCCGCGTCAGTCGTCCGTTCGCTGGTCCG
CCCGTCCGTCCGTCCGTCCGCCCGCCCCGAAGCCTCTCGCCGCCCTCTCCGCCGGAGCGC
CGGCGAGCGAAGAACCGTCCTCCTCCTCCCGGTTTGTTGTCTGCCATGGGTGACTACACA
ATCCGGATAAGCACCAGCTTGATCGAACAGCTCGCGCGCGATGACGAGAAGCAGGTGAAA
AGGAGGACCAGGAAACCCAAGCCGAAGAAGGTCGTGGAGCAACAAGAGGAGCCTCAGGAC
AATGGGAGGGAACTTCCAACTGAACCCAAGAGCAGCCCTGCTCCTGGGTGGTCACTGCCA
CCCCCCATGTACCTACCAGTGACCCCTGCTGCTCCACTGCCCCCGCCGGTCATCCAGGAG
GTGGAAGCCATACGCACTGTGGTGGCGGAGAGCGAGAAGGTGCTGGAGAAGCTGCAGAAG
AAGGAGGCGACGATGCGCGATGAGCTCACCAAGAGGGCCAAGGAGCTGCACGACAAGGAG
TTCAAGCTGCCGTACCAGAACCCCTCGCCGTGCACCGACGAGAGGGCCGGGTGCGCCGAG
TGCTACAGGAGCAATGTGCAGGACCCGCTCAAGTGCGCCGAGGCGGTGAAGAGGTTCGAG
GCGTGCGTCCGCATGGCGAGGCGGAGCGGTGGTGCCATGGGAGCTGCTCAGTAGTAGCGC
TGGAGGAGGGGTTGTGAGTCGGAGCTGAGTGAGCGAGGTGTCGTAGACACGATTTTGCTT
CTGTCGGGATGATTGATTGAATAACCTGCAGGGATTTTCGATGAGACCTGAAACACCATC
AGTTGTAGATTAATTCTGTTATGGGATTGCACCAGTCTGGGCGAGGCCCGAGTGTCCTTA
GATTTGGGGGTTCCCTGTTACTTACATACTACATTCTGCTGCAATATCAAACGTGAATTG
CGGGTGTGAATTATTGTGTTTTCACGAGAATTATTCGGTAATCAAACCGCATCCTCTTGC
AAGGTTGTGTTTGTGATAAAAAAAAAAAAAAAAA



Homology of Contig U35_16353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g01300.11813e-61protein|expressed protein
Brachypodium v1_2Bradi2g39900.11814e-74
Arabidopsis v10None