barSeed - Barley Seed Development Database

Probe CUST_13552_PI390587928

Source Contig U35_16354

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13552_PI390587928	Hv_44K_v2	CGAACCCCATGTTGAAATTCTGTCGATTGCATCCTGATCTATGTAATTCTGGATTAAAAA	1263	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.106	1.784	1.451	1.040	0.429	0.516
Raw	99.552	258.211	178.775	208.765	28.777	37.929

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC06722	1302	3e-25	1243 - 1302	100	60 / 60	plus	ABC06722
Harvest35	U35_16354	1323	3e-25	1264 - 1323	100	60 / 60	plus

Contig Sequence (1323 bp)

>U35_16354 1323 Hv_44K_v2
AACCCCGAGTCCACCCTGCCTGCTTCAGAGTCTCAGCTCCCGACCCAGCCCTTCCCTTCC
CACACGCCCTCGACTCAACCCATGGGCGCCGGCGATAGGACGGTCGCGGGCATGCCGCGC
ATCGGCATGGGCACGGCGGTGCAGGGGCCCAAGCCGGACCCCATCCGCCGCGCCGTCCTC
CGGGCCATCGAGATTGGGTACCGCCACTTCGACACGGCGGCGCACTACGAGACCGAGGCC
CCCATCGGCGAGGCCGCCGCCGAGGCCGTGCGCTCCGGCGCCGTCGCCTCCCGGGACGAC
CTCTTCATCACCTCCAAGCTCTGGTGCAGCGACGCGCACGGCGACAGGGTCGTCCCCGCC
CTCAGGCACACGCTCCGGAATCTCCAGATGGAGTACGTGGACCTGTACCTCGTCCACTGG
CCGGTATCCATGAAGCCCGGGCGGTTCAAGGCCCCCTTCACGGCGGAGGACTTCGTGCCG
TTCGACATGCGGGCCGTGTGGGAGGCCATGGAGGAGTGCCATAGGCTGGGCCTCGCCAAG
GCCATCGGCGTCGCCAATTTCTCCTGCAAGAAGCTCGACACCCTCCTCTCCTTCGCCACC
ATCCCTCCCGCCGTCAATCAGGTGGAGGTGAACCCTGTGTGGCAGCAGAGGAAGCTGAGG
GAGTTCTGCAGGGGCAAGGGCATCCAGCTGTGCGCCTACTCGCCGCTTGGGGCCAAGGGC
ACGCACTGGGGCAGCGACGCCGTGATGGACGCCGGCGTCCTGCAGGACATCGCCGCGTCC
AGGGGCAAGAGCGTGGCGCAGGTGTGCCTGAGGTGGGTGTACGAGCAGGGGGACTGCCTC
ATCGTCAAGAGCTTCGACGAGGCCCGGATGCGGGAGAACCTGGACGTGGACGGCTGGGAG
CTCACGGAGGAGGAGCGCCGCAGGATCGCCGAGATCCCGCAGCGCAAGATCAACCTCGGC
AAGCGCTACGTGTCCGACCACGGGCCTTACAAGTCCCTCGAGGAGCTCTGGGACGGCGAG
ATATGAGTAGCCTGTGGAGACCGACTGGCCTGCCGGCGTACCAGCGTTTGTCATCCTCGG
CCATGGATGGCTGGTTGATTGGGGGACAGCTTTGCACTGATTTCCCTTGGAATAAATCAA
TAAAACGATGTGTTGCGTTTCAGTGAATGAATGAAGATGTTTGCTACTAAAAAAAAAAAA
AAAAAGGAAGTAAAGAGATTGGGATCGTTATGCGTACTGACTGTCTGCAGAGGTTCGGCG
AAACGAACCCCATGTTGAAATTCTGTCGATTGCATCCTGATCTATGTAATTCTGGATTAA
AAA

Homology of Contig U35_16354 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13390.2	319	0.0	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi1g68740.1	316	0.0
Arabidopsis v10	AT1G59950.1	320	3e-118	NAD(P)-linked oxidoreductase superfamily protein \| chr1:22068033-22070588 REVERSE LENGTH=320