barSeed - Barley Seed Development Database

Probe CUST_1354_PI390587928

Source Contig U35_30068

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1354_PI390587928	Hv_44K_v2	TTTCTGAGCTCCGTTTTTTGGAAGACCTGTGCAATTCAGCCATACAGAGTGGATCGACAT	388	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.726	2.365	1.252	0.616	0.198	0.244
Raw	1634.870	2243.151	1026.988	807.158	90.932	118.717

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57482.3	3543	2e-24	76 - 135	100	60 / 60	minus	None
MLOC	MLOC_57482.2	3769	2e-24	199 - 258	100	60 / 60	minus	None
MLOC	MLOC_57482.1	3909	2e-24	526 - 585	100	60 / 60	minus	None
JLOC1	JLOC1_37260.2	3918	8e-25	3371 - 3430	100	60 / 60	plus
JLOC1	JLOC1_37260.1	3866	8e-25	3319 - 3378	100	60 / 60	plus
Harvest21	ABC29762	571	3e-25	389 - 448	100	60 / 60	plus
Harvest35	U35_30068	571	3e-25	389 - 448	100	60 / 60	plus

Contig Sequence (571 bp)

>U35_30068 571 Hv_44K_v2
CAGAGGTAGAGGTAGAGGCCAGCAGCACGGCCGAGGGTCAGGCGACAGAAGCAGTTTCAG
ATCCAGATCCGAAGCGCCGCAATCAGGAGACGGACAGAGCAGCAGAGGCGGAAGACCACG
AGGCCGCGGCATTAGACCTGGGAGTGGCGGGTTCAACAGGACGCGAGGCCGCGGTGGTGG
GATGGGGCCGTCCAGCCACTCCCCTAGGTTCAAGAAGCCCAGAACCGCGGCGGCATCGTG
AGAGATCAGCCGAAAGTCTGTCGCACCGCCCGGCCATCCTCCTGAAGGCTGTGGATTTTT
TTGCCTACCGTGCTAAAAGAGCTTCGCAGACACCCGACGGGGCCGTGTAGTTCCGGTGCA
ATTTAGCGAAGCTCCATGGGGGATGAGTTTTCTGAGCTCCGTTTTTTGGAAGACCTGTGC
AATTCAGCCATACAGAGTGGATCGACATGGGGGGAATGCTTGACGGAGCAGTGTATCGAA
GGCCGCTTTGGGCCGTGAAATTTTGCCTAGTGAAAACACGAGCTGTAGGATCTGAGCGCC
GGACACTGTTCACGGTATTATTGCTTTAAAA

Homology of Contig U35_30068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None