- Probe CUST_13545_PI390587928
- Source Contig U35_42620
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13545_PI390587928 | Hv_44K_v2 | ATTGTTTGGCATTACAGTACTACTTGCCGATGGCAACGTGAGAATGTTTGGTCCAAAAAA | 11 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.811 | 1.458 | 2.306 | 1.629 | 0.642 | 0.518 |
| Raw | 143.199 | 408.252 | 565.320 | 612.671 | 86.954 | 75.239 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_79184.1 | 2611 | 9e-22 | 38 - 92 | 100 | 55 / 55 | minus | ABC38394 |
| JLOC1 | JLOC1_52760.1 | 2580 | 5e-22 | 2520 - 2574 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC38394 | 454 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC38394 |
| Harvest35 | U35_42620 | 454 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (454 bp)
>U35_42620 454 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGACCAAACATTCTCACGTTGCCATCGGCAAGTAGTACTGTAA TGCCAAACAATGCTCAAAGCTGTTCACGATGCATGGTTCTTTGATGCTGGCAATGCATGC TACCGGCAGTTTGAGAAAGGAAAAAAATCAAGACTATATACAAAGAAGAAAATGGCCATT GGATTCATACCCGGCCGAATAATTACTGCAGATTCGCGGCGTGCATTGGTTCTTTATGCT TGTCATTTCGTCTCCGAGGGAGCAATCTTAGCATTCAGCAAGAGGATGCAGTCAGTGGTC AGCTGTTCTTGGCCTCCTGCAGCATCTCTACAGCCTTCTTCATCTTGGGCCGCTTCGCCG GGGCGCGCTCCGTGCACAGCATGGCGACCTTGAGCACGGCGAGCATCTGCCTCCGCCACG CAAACGACACGGTGCTCAGCCTTGGGTCCATGAT
Homology of Contig U35_42620 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |