barSeed - Barley Seed Development Database

Probe CUST_13543_PI390587928

Source Contig U35_16359

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13543_PI390587928	Hv_44K_v2	TGGATCACCATGACATATGTGATATATATGGTGTGATATGGATAATGCATGAACATGTTC	998	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48651.1	265	7e-23	60 - 119	98	59 / 60	plus	ABC06566
MLOC	MLOC_49506.1	261	9e-22	86 - 145	97	58 / 60	minus	ABC06566 ABC18391
JLOC1	JLOC1_31218.1	257	4e-23	61 - 120	98	59 / 60	plus
JLOC1	JLOC1_31684.1	395	5e-22	220 - 279	97	58 / 60	minus
Harvest21	ABC06566	1107	3e-25	999 - 1058	100	60 / 60	plus	ABC06566
Harvest35	U35_16359	1106	3e-25	999 - 1058	100	60 / 60	plus
Harvest35	U35_16360	1155	1e-23	857 - 916	98	59 / 60	plus

Contig Sequence (1106 bp)

>U35_16359 1106 Hv_44K_v2
CCCGGCTCCATGCCCCGGCGACCTCGGCTCAGCGCCCCCGCGCCCTGGCCTCGCCCGTGA
CAACCCACGCCCCGGCGACCCCGGCCTCGCCGCCGCGCGCCCGGAGACCAGAGCACCTGC
GCGCGAGCGAGTGCGTGGCTGCCAGGGCCACCTCCCGGTTCCGTTCCGTCCACTCAGCCT
CCTCGCCCCCTCCGCGCCGCGCGTGCATCAACGGAGCGTCCAGATCCCAGTCGACACGCG
GCGATCCGGCCCCCCTTCCAGATCCCGATCCCCCGGACCTCTCCCCGCGGCCGATGCGAC
CCGTGGCGCCCCCGCGCTGCCGGATCGGACGACGATCCGGCTGACGCCCGCCTCCCGCTC
CTGCGACGCGCCCGGAATTTCGTCCCGAATTCGATGGGCTCCTCCGGATTCGCCGCGCTC
GCGCTGCTCCTCCTTACCTTCGCCCTGCTACCGGACCCTGCGGCGGCGGCTAGGGTTTTG
CAGGGCAAGAAGCCCGGCTCCGGCGAGGGAGCTCCTGCACTTACCCTCGCTACAGGCAGA
TCTGAGAAGAGTGGCACCTCCAAACAACTTGATCAATCATCAACTGCTCTACAGAACCCT
GAGACCGGTAAAGAGCACCGATTCAATTGGACAATTTTTTGTAGTCCAGAATACTGGCCA
GAAAAAAGTAACTGTTGGCGTCAAAGCAACATCAGATATAAGTATTAAGCAGACATTGCT
ACCTCTCAGCAAGGGTGAATCTAAAAGGGTTAACATAAGCTACAGCAGTCCAAATGGTGG
AGAGGCCTTACAGTGCTGGATGAACCAGTCGAGCTTCTTCGACCAGCAGTAGTTGGCCCA
GGGATGATGGAGTAGTAAAAGGAGCAGGAGGTTGCCAGCGTGCTCAAGAAATGTATGTCT
CTTCCTGCAGTGGGCCTGGCCTTTAGCTTGTATCTTAGGTGACAAATCTTGTAGTGCCAA
AATGTCTCATAGTGATATCTATCTATCTATTTGTGATATGGATCACCATGACATATGTGA
TATATATGGTGTGATATGGATAATGCATGAACATGTTCTGTTCATATATGTGATATGGAT
CATTTGACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16359 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None