barSeed - Barley Seed Development Database

Probe CUST_13530_PI390587928

Source Contig U35_28336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13530_PI390587928	Hv_44K_v2	GAGTTGGGTCATCGAATGAAACTCTATTATGATAATAAATAATGTCATTCCTTCCGTGCA	570	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.844	1.385	1.404	0.846	0.270	0.344
Raw	151.257	175.983	163.793	154.693	17.307	23.262

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_41289.1	742	2e-24	514 - 573	100	60 / 60	minus	ABC49854
MLOC	MLOC_28275.1	876	2e-24	798 - 857	100	60 / 60	plus	None
MLOC	MLOC_28414.1	2129	3e-21	108 - 167	97	58 / 60	minus	ABC09517
JLOC1	JLOC1_26923.1	785	8e-25	693 - 752	100	60 / 60	minus
JLOC1	JLOC1_18992.1	862	8e-25	781 - 840	100	60 / 60	plus
JLOC1	JLOC1_19066.1	1349	2e-21	1194 - 1253	97	58 / 60	plus
Harvest21	ABC27150	659	3e-25	571 - 630	100	60 / 60	plus
Harvest35	U35_28336	659	3e-25	571 - 630	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_28336 659 Hv_44K_v2
GCTAGTTGAGACTAGTCGATTTGCCAGGCTCGACTCATCATGAGTCGCTACCCCAGAACG
ACTCATCGACTCAAAAACCTTGATATGTTGTTTTTTCTCTCTTATAACCTCGTCAATCTT
TTGATGGATGGAGGGCTTGCTTTTGTTTTAAAAAAACGTCCTGTGCTAATTAGTTCTCTT
GTATTTTTTTGACATGTATAATCTTCTTTGTTTTGCATCCAACTAGCTGACCTTTTGCCT
GCATTCTCCTGCCAGGTTTCCCTATACTTGGGATAGAATCGCAGAAAATGCAAAATCCTG
ATCTCTGTAAGGCAATGGGAAAGAAATCTGACCAAAAGGGTGTTCGTATCAGAAGAATTG
AACCAACTGCTCCTGAATCTAGATGCATGCAACCTTGTGATATTATTCTTAGCTTTGATG
GTATTGAGATCGCCAATGATTTATAGCTTCTGTCATACTTTATACATGTATCTACGTATT
ATCATTCATTCTTGTTCACTTCACGACACATGTTCAGTTCTAGCTATAGGTTATACTACT
CATTCCAATGAAGTACAAAGTGTTCGTTNTGAGTTGGGTCATCGAATGAAACTCTATTAT
GATAATAAATAATGTCATTCCTTCCGTGCATATTACACTATATACGGTCTAAAGCTTTG

Homology of Contig U35_28336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None