barSeed - Barley Seed Development Database

Probe CUST_1351_PI390587928

Source Contig U35_42041

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1351_PI390587928	Hv_44K_v2	TGTGATGAACTGAACTGAACTGTGTTCTGAAACATTGCAGGATGAGCAACAAGATGGGGC	515	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38762.2	2988	2e-24	1166 - 1225	100	60 / 60	plus	ABC02867
Harvest21	ABC37391	611	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_42041	611	3e-25	516 - 575	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_42041 611 Hv_44K_v2
GGTTCTCGATTCAGGCGGTGGTGACCAACCTGGACGACGCGCACGAGCAGATCGACACGG
CCATCGCGACGGCGCTCAGGGAGAGCAAGCCGGTTTACCTCAGCATCAGCTGCAACCTCC
CTGGGCTACCTCACCCCACCTTTACCCGTGACCCGGTCCCCTTCTTCCTCGCCCCCAGGT
ACTGATAACTGCACCTACTCTGTTCTTATCCCAAGTCGTCGTTTCCGTGCAGTACGTAGT
GCTTTGAATCTGATCAGAGGCTTTTTTCCCGATTATTGTGCCAACAGTTTATACCTTGGA
TCATGGAACGTTNCCCCCCAATTATCTACCGTGGGTCTTAACTCGTGATTTGCATGTACT
AACTGCTGGGACCTTAAGATTTTATCGCCACAGAAATGTGCCCATATGAATCATTAGCAT
CGAGAATTTCAGATCGTGAATTCTGATGCTATAATCTGAAGCGACAGATGCACTGAACAG
AGAATTGCTGTAATATATGATTGTATCTGAAGCCATGTGATGAACTGAACTGAACTGTGT
TCTGAAACATTGCAGGATGAGCAACAAGATGGGGCTCGAGGCTGCAGTGGAGGCAACCGT
CGAGTTCCTGA

Homology of Contig U35_42041 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None