barSeed - Barley Seed Development Database

Probe CUST_13515_PI390587928

Source Contig U35_16364

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13515_PI390587928	Hv_44K_v2	GTACATGAAGCACATTGCTTTATTTGATACCGATAGTAGCTGTATATAAAGCAACTAGTC	1442	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.209	2.464	0.983	0.856	0.801	0.840
Raw	27.718	35.450	11.714	16.539	3.254	5.157

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354691	2017	2e-24	1773 - 1832	100	60 / 60	plus	ABC04782
MLOC	MLOC_56151.2	4090	2e-24	2475 - 2534	100	60 / 60	minus	ABC04782 ABC29956
MLOC	MLOC_56151.3	4112	2e-24	2475 - 2534	100	60 / 60	minus	ABC04782 ABC29956
MLOC	MLOC_56151.5	1103	2e-24	34 - 93	100	60 / 60	minus	ABC04782
MLOC	MLOC_56151.4	3655	2e-24	2094 - 2153	100	60 / 60	minus	ABC04782 ABC29956
MLOC	MLOC_56151.1	3423	2e-24	1209 - 1268	100	60 / 60	minus	ABC04782 ABC29956
JLOC1	JLOC1_36296.2	1542	8e-25	1315 - 1374	100	60 / 60	plus
JLOC1	JLOC1_36296.1	2352	8e-25	1540 - 1599	100	60 / 60	plus
JLOC1	JLOC1_36295.2	3233	8e-25	1094 - 1153	100	60 / 60	minus
Harvest21	ABC04782	910	3e-25	95 - 154	100	60 / 60	minus	ABC04782
Harvest21	ABC04781	1559	3e-25	1443 - 1502	100	60 / 60	plus
Harvest35	U35_16365	765	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_16364	1559	3e-25	1443 - 1502	100	60 / 60	plus

Contig Sequence (1559 bp)

>U35_16364 1559 Hv_44K_v2
CAGCTTCGACTGGCTGGACCAGTGGTACCCGCTGGCCCCCGTGTGCGACCTGGACCCCGG
CGCGCCGCACGGCAAGACGGTGCTGGGCCTCCGCGTGGTGGCCTGGTACGACCGCGCCGT
CGACGAGTGGCGCGTGTTCGACGACGCCTGCCCGCACCGCCTCGCGCCGCTCTCCGAGGG
CCGCATCGACGACAAGGGCCGCCTCCAGTGCGTCTACCACGGCTGGTGCTTCGACGGCCG
CGGCTCCTGCCAGTTCATCCCACAGGCCCCCGCACTCGGCCCCCCGGTGCACAAGAACAG
CAAGGCGTGCGTGGCGTCGTACCCGAGCGTGGTGCAGAACAACATCCTGTGGTTCTACCC
GAAGGCCGACGCCCAGCACCAGGACGTTCTGCAGAGGAAGCGCCCGCCATTCATCCCGGA
GATCGACGACCCCTCCTTCGTCACCGTCTACGGCGTCAGGGACCTCCCCTACGGGTACGA
TGTGCTGGTGGAGAACCTCATGGACCCTGCACACGTCCCCTACGCGCACAAGGGGCTCAT
GGGCAAGCTTCGCAAGAAGGAAGACCCAGGAAGAGTTGAGTTCGACGTCGAAGGCGGCGG
GCCAGTGAAGATGAAGATAGCGGAGGCGGATATCGCCGGGTTCCTGTCGGAGCAGGACAA
TAGCGGATACTTCCGGTACGTCGCGCCGTGCACCTTCTACGGCTCGCCCCTCCCCAAAGA
GGAAGAGGGAGAGGAGAAGAAGAAGAAGAAGCCGCCTCAGTTCATGCTGGTGTTCATGTG
CGTCCCGGTGTCTCCGGGGAAGAGCAGGGTGATCTGGGCGTTCCCGAGGAACATCGGCGT
CTGGCTCGACAAGGTCATACCGCGGTGGTACTACCACATCGGCCAGAACGCTATCCTGGA
CTCAGACATCTACCTCCTCCACATCGAGGAGCGCAACTTCGCTGCGGCGGGCGTCGAAAA
CTGGCAGAAAGCCGTGTACGTGCCGACGTCGTCGGACAACATGGTGATCGCCTTCAGGAA
CTGGTTCAGAAAGCACTGCAAGAGTCAGGTCGGCTGGGCCGCCCCGACGATCGGTCAGTT
ACCAGAGACTCCAACCAAAGACAAGCTCATGGAGAGGTACTGGTCACACGTCGCGCAGTG
CAGGAGTTGCAGCACGGCGCTGAAGACCATGAAAGCGCTGGAGGTTGCCCTGCAGGTCGC
GTCGGTGGCGGTCGTCGGATTCCTCGCCGTCGCCAAGGGGGCGCTGGTGACGTCGGTCGT
GCAGAGAGCCGCCGTCGTGACATTGGCGGTGCTGTGCTTCGCCGCGTCCCGCTGGCTCGC
CAGCTTCATCGAGAAGAACTTCTATTTCCAGGATTACGTCCATGCCTACAAGTGAAGGCC
ATATCATGCGCCTTCCGTTGTTAGGGTTTTGTAGCTCCTGAGCTGATGCAGCTTTAGAAA
GTGTACATGAAGCACATTGCTTTATTTGATACCGATAGTAGCTGTATATAAAGCAACTAG
TCTTTTTTTTTTCAAACCAAAACCTTCTTCCGATTTTCATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16364 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59110.1	556	0.0	protein\|pheophorbide a oxygenase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g04810.1	523	0.0
Arabidopsis v10	AT4G25650.2	559	3e-176	\| Symbols: ACD1-LIKE, PTC52, TIC55-IV \| ACD1-like \| chr4:13081021-13083153 REVERSE LENGTH=559