barSeed - Barley Seed Development Database

Probe CUST_13510_PI390587928

Source Contig U35_16367

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13510_PI390587928	Hv_44K_v2	AGTGTGTCCTACCATGGGCAAACGATGCTGAATAATTTTGCTGTTTGTGTGCTCAAAAAA	899	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.051	0.453	0.802	1.543	1.426	2.370
Raw	129.111	1845.230	2772.113	8412.160	2684.183	4847.180

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1690.1	1336	9e-22	1165 - 1219	100	55 / 55	plus	ABC12776
MLOC	MLOC_1691.1	219	3e-21	166 - 219	100	54 / 54	plus	ABC12776
JLOC1	JLOC1_1029.1	1225	5e-22	1050 - 1104	100	55 / 55	plus
Harvest21	ABC12776	613	3e-25	12 - 71	100	60 / 60	minus	ABC12776
Harvest21	ABC44746	360	1e-23	12 - 71	98	59 / 60	minus
Harvest35	U35_16367	970	3e-25	900 - 959	100	60 / 60	plus

Contig Sequence (970 bp)

>U35_16367 970 Hv_44K_v2
TCGAGCACTGTTGGCCAACCCGAGCATTCTGCAACCACTTCCATCAACGCCACACACGTC
TCCTACCTACGCTTCGCACATCATCAGGGCTTGCCAATGGCAGGAGGCGGCGAGGGCGAG
CTGAAGCTGCTGGGCGTGTGGACGAGCCCGTTCGTCATCCGGGTGCGCGTGGTGCTCAAC
CTCAAGTCGCTGCCGTACGAGTACGTGGAGGAGAACCTGGGCAGCAAGAGCGCGCTCCTC
CTGGGCTCCAACCCGGTGCACCAGAGCGTGCCGGTCCTCCTCCACGGCGGCCGCCCCGTG
AACGAGTCCCAGGTCATCGTGCAGTACATCGACGAGGTCTGGGCGGGGGTCGGCCCGTCG
GTGCTCCCGGCCGACCCCTACGAGCGCGCCGTGGCGCGCTTCTGGGCGGCGTACGTCGAC
GACAAGGTCGGGTCGGCGTGGACGGGGATGCTCTTCTCGTGCAAGACGGAGGAGGAGAGG
GCGGAGGCCGTGTCCCGCGCCGTGGCGGCGCTGGAGACCCTGGAGGGCGCGCTCGCGGAG
TGCTCCGGGGGGAAGCCGTTCTTCGGCGGCGACGCCATCGGGTTCGTCGACGTCGTGCTC
GGCGGCTACCTCGGGTGGTTCGGGGCGATCGACAAGATCATCGGGCGCCGGCTGATCGAC
CCGGCGAGGACGCCGCTGCTGGCCAGGTGGGAGGAGCGGTTCCGCGCGGCGGACGCGGCC
AAGGGCGTCGTGCCGGACGACGCCGACAAGATGCTCGACTTCTTGCCCACCCTGCTCGCT
TGGATCGCCTCCAAGGCCAAGTGAACCGTGCGGCCGTGACATCGTCTGCTCCTGGCATGT
GTGTTCGTCTGTGTGTGTCTGAGTCCTTTCATTGTGTGTTGAATAAATGTACCACATGCA
GTGTGTCCTACCATGGGCAAACGATGCTGAATAATTTTGCTGTTTGTGTGCTCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_16367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38740.1	237	5e-111	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi3g31880.1	236	7e-115
Arabidopsis v10	AT1G10370.1	227	3e-61	\| Symbols: GST30, ATGSTU17, GST30B, ERD9 \| Glutathione S-transferase family protein \| chr1:3397274-3398273 REVERSE LENGTH=227