barSeed - Barley Seed Development Database

Probe CUST_13503_PI390587928

Source Contig U35_16395

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13503_PI390587928	Hv_44K_v2	ACATGCCGCCAACACAGCAAGTAGATTTTTCATTTTGCTGTCCAAAAAAGAAGACAAAAA	2551	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.451	1.225	1.106	0.887	0.416	0.441
Raw	168.852	231.443	177.019	227.636	35.049	41.654

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC05297	717	3e-25	1 - 60	100	60 / 60	minus	ABC05297
Harvest35	U35_16395	2611	3e-25	2552 - 2611	100	60 / 60	plus

Contig Sequence (2611 bp)

>U35_16395 2611 Hv_44K_v2
CAGCCGCCAGCCCGCGAGCTCGCACCACCGTCTCACCCGCCGCTCCGACCGACCCGAGCC
GAGCGAGTAGGGTTTGCCTCGCCGCCGCCGCCGCTCGACGTGCACGCGATGGCGGCGCTC
GTGGAGACGAGCATGGGGGTGGTGCGGGAGGTGCTGGGCGACTCCGTCGTCGACGAGGTG
GACGAGCCCATCGTCTCCTACATCGCCAACGTCCTCGCCGACCAGGACTTCGACTTCGGC
CCCCCCGACGGCCACGGCATCTTCGACGCCCTCGGCGACCTCCTCATCGACGCCCGCTGC
GTCTACGACCGCGAGCACTGCCTCGAGGTCTGCACTAAGCTTTGTGAGAAGTTGGGGAGC
CATGGCATCGTCAAACCTAAGGCAGCCGTGCGGAGCCTGGCCACGCCTCTGCGCATGAAC
GCGGGCATGGAGGAGCAGGTCGCTCCGAAGAAGCCAGAGAATATCTTCGATGCGCCCTTG
CTGTCCTCGCGTGACAAGGCCAAGCTCGAACGGAACAAGAGAAAAGAAGACAGGCAAAGA
GAGGCCCAGTACCAAATGCATGTTGCCGAAATGGAGGCGCTCAGGGCTGGAATGCCTCCA
GTTTATGTAAATCACAGTAATGTGGGTGGCACAACCATTAGGGATATCCATATGGAGAAC
TTCAGTGTTACTGTTGGAGGTCGTGATCTTATTCAAGATGTCACCTTAACGCTTGCTTTT
GGAAGGCACTATGGTCTTGTTGGAAGAAATGGTACTGGAAAGACTTCTCTTCTCAGAGCT
ATGGCTCAACATGCAATTGATGGAATTCCTAAGAACTGCCAGATATTGCACGTTGAACAA
GAGGTCACCGGTGATGACACAACAGCTTTGCAGTGTGTGCTGAATGCTGATGTTGAACGG
GTCCAACTTTTGCAAGAAGAGGCCCAGCTGGGTCAATTACTGAAAGATCTAGAGTATGAG
GCAGAGTCCAAACAGAGCCTAGACAAGAGCAAGGGTGATGTTGACAAAGATACTATCAGC
AAGAGGCTTGAGGAGATATATAAGAGGCTTGAATTCATTGATGCAGATGCAGCAGAAGCT
CGTGCGGCATCAATTCTGGCGGGTCTCAGTTTCACTCCAGAAATGCAATGCAAAAATACA
AAATCATTTTCGGGAGGATGGCGGATGAGAATTGCACTAGCACGTGCTCTATTCATCGAG
CCAGATTTACTGCTACTTGATGAGCCAACCAATCATCTTGATCTGCATGCTGTGTTATGG
TTAGAAACATATCTCCTGAAGTGGCCAAAGACATTCATTGTTGTGTCCCACGCTAGAGAG
TTTCTGAATACGGTTGTCACCGACGTTCTTCACCTACATGGTAAGAAGCTACATGCTTAC
AAAGGTGACTATGACACATTTGAGAGGACAAGGGAGGAGCACCTCAAGAATCAGATGAAA
GCCTTCGAAACAAATGAGAAGGCCAGAGGACACATGCAGGCATTCATTGACAAATTCCGA
TACAATGCAAAGAGAGCATCACTTGTTCAATCAAGAATCAAGGCATTGGAGCGAATGGAA
CATGTTGATGCTGTTGTTAGTGACCCAGACTATAAATTCGAATTTCCAACTCCAGATGAC
CGCCCTGGACCACCAATCATTAGCTTCAGTGACGCTTCATTTGGTTACCCTGGAGGGCCT
ATTTTGTTTAAAAACTTGAATTTTGGTATCGACCTCGACAGCCGCATAGCAATGGTTGGT
TCAAACGGTATCGGGAAGTCCACTATACTGAAATTAATATCTGGAGACCTACAGCCAACT
TCAGGAACAGTGTTTCGCTCCCCCAAGGTTCGCATGGCTGTATTCAGTCAGCATCATGTT
GATGGACTTGATTTGACGGTGAACCCCCTTTTGTACATGATGAGATGCTTCCCGGGTGTA
CCTGAACAGAAACTGAGGTCACATTTGGGTTCCTTTGGTGTTACAGGAAATCTTGCCCTC
CAATCTATGTACACTTTATCAGGTGGTCAGAAGAGTAGGGTTGCGTTCGCGAAGATCACC
TTCAAGAAGCCGCACATTATCTTGCTTGACGAGCCTTCTAACCATCTTGATCTCGACGCA
GTGGAGGCGCTCATCCAGGGTCTGCTCATATTCCAGGGAGGAGTGCTGATGGTGAGTCAC
GACGAGCATCTGATCACGGGGAGTGTGGACGAGCTCTGGGCGGTGACGGACGGCAAGGTT
GCCCCGTTCCCGGGCACGTTCAAGGAGTACAAGAAGATGCTCACGACATAAACCTGGAAA
AAGGACAGGACATAAGGGAAGATGCCCACACAGACATACAGAGAGTATATGTATGATATG
TACGCCCTGGCATGGGAAACTGATGTAATCTTATGCTTATTACCTACCTGAGGTTCGAAG
GTTCGACCGGAACTAAGCTACTACATACAATTTTGTTTGATCCAACCTGCCCGACAATTT
GTATCGAGCTTGTGCTTTTCTTGGACAAGCTTTGGAGTTGGAGGTGGTGAAAGTATGCAG
TATGGGTACATACCTCTACTTGTTGTACAACACATGCCGCCAACACAGCAAGTAGATTTT
TCATTTTGCTGTCCAAAAAAGAAGACAAAAA

Homology of Contig U35_16395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g58020.1	723	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g56780.1	721
Arabidopsis v10	AT1G64550.1	715	\| Symbols: ATGCN3, GCN3 \| general control non-repressible 3 \| chr1:23968850-23973369 FORWARD LENGTH=715