barSeed - Barley Seed Development Database

Probe CUST_134_PI390587928

Source Contig U35_45890

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_134_PI390587928	Hv_44K_v2	TTACACAACATTAATGGAGTCGCTCACCCATGGAGAGGTGACGCACAAATTCAAAACCCT	32	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359120	2197	2e-24	1079 - 1138	100	60 / 60	plus	ABC49981
MLOC	MLOC_69065.1	1519	2e-24	1285 - 1344	100	60 / 60	plus	None
MLOC	MLOC_69065.7	1227	2e-24	988 - 1047	100	60 / 60	plus	None
MLOC	MLOC_69065.4	1894	2e-24	898 - 957	100	60 / 60	plus	ABC49981
MLOC	MLOC_69065.2	2711	2e-24	1600 - 1659	100	60 / 60	plus	ABC49981
MLOC	MLOC_69065.5	1920	2e-24	1047 - 1106	100	60 / 60	plus	ABC49981
JLOC1	JLOC1_45752.2	1980	8e-25	888 - 947	100	60 / 60	plus
JLOC1	JLOC1_45752.1	2149	8e-25	1057 - 1116	100	60 / 60	plus
Harvest21	ABC45267	294	3e-25	33 - 92	100	60 / 60	plus
Harvest35	U35_45890	294	3e-25	33 - 92	100	60 / 60	plus

Contig Sequence (294 bp)

>U35_45890 294 Hv_44K_v2
AATATTACTGATGTGGAATTCCAGAGAGCAGGTTACACAACATTAATGGAGTCGCTCACC
CATGGAGAGGTGACGCACAAATTCAAAACCCTGGTCCGTGTGGTGGCGGCGTACCCTTGT
CAAGGCAAAGAGCTGCATTCACTATTGGGGGGTGATTATTGCCTTCGGCTGACTCTCGAG
GATCCTACAGCGAGAATCCATGCATACGTCCACAAGGACGACGCGGTGAGCTTTTCCGGC
GGTTTCCTCACGCTGGCTGCGCTGACGCAGAAGATGAATAGGCTGCTGGGCGTC

Homology of Contig U35_45890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g12880.1	487	2e-51
Arabidopsis v10	None