- Probe CUST_13490_PI390587928
- Source Contig U35_28373
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13490_PI390587928 | Hv_44K_v2 | TTTTGCACCAAATTGGTCTCGATGTTAATCGAACTGATCGTACACTAGTTTATTACGAGA | 504 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.563 | 0.545 | 1.368 | 2.017 | 1.228 | 1.063 |
| Raw | 6.135 | 8.234 | 22.073 | 48.970 | 11.140 | 10.403 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365525 | 1913 | 2e-24 | 851 - 910 | 100 | 60 / 60 | plus | ABC49924 |
| MLOC | MLOC_63656.1 | 1692 | 2e-24 | 583 - 642 | 100 | 60 / 60 | plus | ABC49924 |
| MLOC | MLOC_63656.2 | 1697 | 2e-24 | 588 - 647 | 100 | 60 / 60 | plus | ABC49924 |
| JLOC1 | JLOC1_41715.2 | 1689 | 8e-25 | 587 - 646 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41715.1 | 1698 | 8e-25 | 596 - 655 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27203 | 567 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28373 | 567 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus |
Contig Sequence (567 bp)
>U35_28373 567 Hv_44K_v2 CCCGGCAGTATGAGTTCTTGGCGTGCTGCTACAACGACCCGGACATGCTCATCGACCCGG AGACCATCTACCCCACCCGCCCCGACTGCACCGACGCCCCCAAGTCGCGATTCAAGCCCA AGCCTCGCCGCACGCTGAGTCCGAGGAGGTGGAAGCTGCTGTTCAACGAGGAGGGCTGCC TCGACGCCGCTGGAATGATCATGAGAGTACAGCGTGGGGGTGTCCACCCAAATATCAAAG GAGAAGTTTGGGAGTATTTGCTGGGGTGTTACGACCCTAGAAGCACCACTGAACAGAGGA ACCAGTTGCGGCAACAGAGAAGGTTAGAATATGAGAAACTGAAAACAAAGTGCCGAGAGA TGGACACAACAGTTGGTAGTGGAAGGGTAATTACTATGCCTGTCATAACAGAAGATGGCC AGCCTATTGAGGATCCTAACTCAACTGGAGAAAAACCAACCAATAATGGACCACTCACAA AAGAAGTTATTCAATGGAAACTTCTTTTGCACCAAATTGGTCTCGATGTTAATCGAACTG ATCGTACACTAGTTTATTACGAGAGCC
Homology of Contig U35_28373 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g56570.1 | 428 | 5e-97 | protein|TBC domain containing protein, expressed |
| Brachypodium v1_2 | Bradi3g54840.1 | 430 | 1e-112 | |
| Arabidopsis v10 | AT4G27100.1 | 436 | 3e-57 | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:13595845-13598534 FORWARD LENGTH=436 |