- Probe CUST_13475_PI390587928
- Source Contig U35_30696
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_13475_PI390587928 | Hv_44K_v2 | ATTAGTACCATCTTGCTCGGCGGGATCGAACGCGGTCATGGCGGTCATCAAGATGCTCGT | 33 | GeneList: None MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.974 | 0.813 | 0.720 | 0.588 | 1.345 | 1.198 |
Raw | 2.857 | 2.908 | 2.668 | 3.504 | 3.097 | 3.037 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_81957.2 | 1164 | 2e-24 | 1033 - 1092 | 100 | 60 / 60 | minus | ABC03674 ABC16079 |
MLOC | MLOC_81957.1 | 1346 | 2e-24 | 1039 - 1098 | 100 | 60 / 60 | minus | ABC03674 ABC16079 |
JLOC1 | JLOC1_54510.1 | 1315 | 8e-25 | 201 - 260 | 100 | 60 / 60 | plus | |
Harvest21 | ABC30722 | 413 | 3e-25 | 34 - 93 | 100 | 60 / 60 | plus | |
Harvest35 | U35_30696 | 413 | 3e-25 | 34 - 93 | 100 | 60 / 60 | plus |
Contig Sequence (413 bp)
>U35_30696 413 Hv_44K_v2 GCAAGACACATTCCGAGCAGAGTACGATCTTGCATTAGTACCATCTTGCTCGGCGGGATC GAACGCGGTCATGGCGGTCATCAAGATGCTCGTGCTCCCGGCGCTCTGCGCATTGCTGCT CAGAGCAGCATCGGCGGCTCAATGGACGCCCGCCCACGCGACGTTCTACGGCGGCGGCGA CGCGTCCGGCACGATGGGCGGCGCCTGCGGGTACGGCAACCTGTACGGCGCGGGGTACGG CACGCAGACGACGGCGCTGAGCACCGCCCTCTTCAACAACGGCGCGTCGTGCGGGGCGTG CTTCACCATCGCGTGCGACACGCGCAAGTCGCGGATGTGCAAGCCGGGGACCTCCATCAC CGTCACGGCCACCAACTTCTGCCCGCCCAACTACGCGCTCGCCAGCGACAATG
Homology of Contig U35_30696 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |