- Probe CUST_13475_PI390587928
- Source Contig U35_30696
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13475_PI390587928 | Hv_44K_v2 | ATTAGTACCATCTTGCTCGGCGGGATCGAACGCGGTCATGGCGGTCATCAAGATGCTCGT | 33 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.974 | 0.813 | 0.720 | 0.588 | 1.345 | 1.198 |
| Raw | 2.857 | 2.908 | 2.668 | 3.504 | 3.097 | 3.037 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_81957.2 | 1164 | 2e-24 | 1033 - 1092 | 100 | 60 / 60 | minus | ABC03674 ABC16079 |
| MLOC | MLOC_81957.1 | 1346 | 2e-24 | 1039 - 1098 | 100 | 60 / 60 | minus | ABC03674 ABC16079 |
| JLOC1 | JLOC1_54510.1 | 1315 | 8e-25 | 201 - 260 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30722 | 413 | 3e-25 | 34 - 93 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30696 | 413 | 3e-25 | 34 - 93 | 100 | 60 / 60 | plus |
Contig Sequence (413 bp)
>U35_30696 413 Hv_44K_v2 GCAAGACACATTCCGAGCAGAGTACGATCTTGCATTAGTACCATCTTGCTCGGCGGGATC GAACGCGGTCATGGCGGTCATCAAGATGCTCGTGCTCCCGGCGCTCTGCGCATTGCTGCT CAGAGCAGCATCGGCGGCTCAATGGACGCCCGCCCACGCGACGTTCTACGGCGGCGGCGA CGCGTCCGGCACGATGGGCGGCGCCTGCGGGTACGGCAACCTGTACGGCGCGGGGTACGG CACGCAGACGACGGCGCTGAGCACCGCCCTCTTCAACAACGGCGCGTCGTGCGGGGCGTG CTTCACCATCGCGTGCGACACGCGCAAGTCGCGGATGTGCAAGCCGGGGACCTCCATCAC CGTCACGGCCACCAACTTCTGCCCGCCCAACTACGCGCTCGCCAGCGACAATG
Homology of Contig U35_30696 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |