barSeed - Barley Seed Development Database

Probe CUST_13469_PI390587928

Source Contig U35_42672

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13469_PI390587928	Hv_44K_v2	TACCCCCGATGTCTTCTTCCTGTTCAATGCAATGAAACGCAAATTCTTTTGCGTTTTCTC	18	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.111	1.280	1.137	0.900	0.469	0.365
Raw	332.797	578.090	462.462	568.255	110.717	88.893

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362811	3693	2e-24	2473 - 2532	100	60 / 60	plus	ABC38480
MLOC	MLOC_69904.2	1472	2e-24	1389 - 1448	100	60 / 60	minus	ABC09638
MLOC	MLOC_47993.1	546	2e-24	36 - 95	100	60 / 60	plus	None
MLOC	MLOC_40809.1	858	2e-24	756 - 815	100	60 / 60	minus	ABC38480
MLOC	MLOC_34974.1	1898	2e-24	1620 - 1679	100	60 / 60	minus	ABC07927 ABC38480
MLOC	MLOC_4404.1	3855	2e-24	49 - 108	100	60 / 60	plus	ABC38480
MLOC	MLOC_4404.2	3878	2e-24	49 - 108	100	60 / 60	plus	ABC38480
MLOC	MLOC_4403.1	7337	2e-24	49 - 108	100	60 / 60	plus	ABC38480 ABC47840
MLOC	MLOC_69904.1	1541	6e-24	1483 - 1541	100	59 / 59	minus	ABC09638
MLOC	MLOC_65186.1	1539	7e-23	1322 - 1378	100	57 / 57	minus	ABC38480
MLOC	MLOC_31067.1	959	7e-23	850 - 909	98	59 / 60	plus	ABC38480
MLOC	MLOC_24593.1	860	7e-23	41 - 100	98	59 / 60	plus	None
JLOC1	JLOC1_26651.1	858	8e-25	756 - 815	100	60 / 60	minus
JLOC1	JLOC1_30875.1	532	4e-23	476 - 532	100	57 / 57	minus
JLOC1	JLOC1_16899.1	663	4e-23	41 - 100	98	59 / 60	plus
Harvest21	ABC38480	422	3e-25	19 - 78	100	60 / 60	minus	ABC38480
Harvest35	U35_42672	422	3e-25	19 - 78	100	60 / 60	minus

Contig Sequence (422 bp)

>U35_42672 422 Hv_44K_v2
TTTTTTTTTTTTTTTTTCGAGAAAACGCAAAAGAATTTGCGTTTCATTGCATTGAACAGG
AAGAAGACATCGGGGGTACAACCTCCAGAAAGGAGGGACACACACACACACACACACACA
CACACACACACACACATGACCGTCCTCACCAAGCGACTACAACTAGGTAAGGAGGTGCCC
TCAGCTACAGACACACAACGATATTAGGCCTCGCCTTGCCGCCATTGCAAGACACCTCTA
GGAACAACTGCAGCTCCAGGACTGCCCAGGCCAACGTACCTCACACCCATGTGCCTAGGA
TCGGCGGGTGAAAGGCAGGGCCTGATTGGAACTGGTGTAGCAATCGTTGGGGGAGGGCCG
GCGCTGGCAAACAACCTGCTCCCTGTTCAGCCGTCTACGACAACGGTGCATCACCAGCCA
CC

Homology of Contig U35_42672 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None