barSeed - Barley Seed Development Database

Probe CUST_13465_PI390587928

Source Contig U35_28381

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13465_PI390587928	Hv_44K_v2	GATGCATAGATGGTTCCTCTGTCATCCTTGCTCTTATGGAGAATGTGCAAGTTATGGAGT	539	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19934.1	1454	2e-24	582 - 641	100	60 / 60	minus	ABC17969
JLOC1	JLOC1_13820.1	1494	8e-25	693 - 752	100	60 / 60	plus
Harvest21	ABC27217	602	3e-25	540 - 599	100	60 / 60	plus
Harvest35	U35_28381	602	3e-25	540 - 599	100	60 / 60	plus

Contig Sequence (602 bp)

>U35_28381 602 Hv_44K_v2
TGCAGGNAATTCGGTCACGAGGGTGGAATGGCAAACTGCATACTTGTCTGACCCATCTGG
TTTGACAGACATGTTTGCTGACACCCAATTTATGTGGTCAATTTATCACACGGTTACATT
CTTTGAGAAGGCACTCAAGCGGAGCGGTACCAAAAGGTCTACAACAGCTCCACAAGCAGC
CACCACCACAACAACAGCAACTGGTTATCTGCATCCGATGTCTTCACATCTATCATGGAT
TCTGCCGCCTCTCTTAAGGCTGCTGAGATGTATACATGCACTTTGGGCCGAGCCATTTGC
TCAGTCGCTGACAGGAGAAATCAAAGCGGCCAAAAGCATGACTATCTCGGAGCAGGCCAG
TCTACTGGGAGAGACAAGTAAACTCACCAAGGGCCAGGTTGCACCTGCTGATGGATTACT
GGATCTTCAAAGGGAGGGAGAGTCTAAGGAAAATAACATAAGAAACTGGTTACGAGGCGT
CCGTGACAGTGGGTACAATCTTATAGGATTAGCGGCTACTCTTGGTGAAGCATTTTTCCG
ATGCATAGATGGTTCCTCTGTCATCCTTGCTCTTATGGAGAATGTGCAAGTTATGGAGTT
TC

Homology of Contig U35_28381 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g26160.2	1175	4e-86	protein\|exportin 1, putative, expressed
Brachypodium v1_2	Bradi2g12810.1	1193	6e-99
Arabidopsis v10	AT3G05040.1	1202	6e-54	\| Symbols: HST, HST1 \| ARM repeat superfamily protein \| chr3:1401479-1408095 REVERSE LENGTH=1202