- Probe CUST_13463_PI390587928
- Source Contig U35_28382
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13463_PI390587928 | Hv_44K_v2 | GCGGCAGGAGAACACGGCGAGGGAGCAGCAGCTGATGGAGACTCTCAAAGGTCCGGATCG | 60 | GeneList: brown4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.561 | 1.092 | 1.308 | 1.025 | 0.607 | 0.462 |
| Raw | 291.127 | 282.724 | 337.219 | 394.375 | 85.567 | 71.859 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60101.3 | 1669 | 2e-24 | 704 - 763 | 100 | 60 / 60 | plus | ABC07325 |
| MLOC | MLOC_60101.2 | 1637 | 2e-24 | 997 - 1056 | 100 | 60 / 60 | minus | ABC07325 |
| MLOC | MLOC_60101.1 | 1862 | 2e-24 | 1088 - 1147 | 100 | 60 / 60 | minus | ABC07325 |
| JLOC1 | JLOC1_39162.2 | 2026 | 8e-25 | 801 - 860 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39162.1 | 1700 | 8e-25 | 475 - 534 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27219 | 225 | 3e-25 | 61 - 120 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC07325 | 1905 | 3e-25 | 734 - 793 | 100 | 60 / 60 | plus | ABC07325 |
| Harvest35 | U35_28382 | 225 | 3e-25 | 61 - 120 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17347 | 1905 | 3e-25 | 734 - 793 | 100 | 60 / 60 | plus |
Contig Sequence (225 bp)
>U35_28382 225 Hv_44K_v2 CGGGCTGCAGGAATTCGTCCGAGGGCTTGTTGATGGGAAGGAGGAAGATGCGGAGCGTCT GCGGCAGGAGAACACGGCGAGGGAGCAGCAGCTGATGGAGACTCTCAAAGGTCCGGATCG NGCATTTGNGGATCTCATTTCTGCCTCTGNTATTACGNAGGATATNATNGACAGNTTNAT CCTCTTNNAGGATGCCAGNNNAATACCGNNATTGCCTNCTCTNAG
Homology of Contig U35_28382 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |