- Probe CUST_13461_PI390587928
- Source Contig U35_28384
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13461_PI390587928 | Hv_44K_v2 | GCAGAAACGGTAAAATATCTCTGGCTTCTTTTTGATTTAGCTGTAGGCCCTGATACATTG | 614 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.985 | 0.940 | 1.447 | 1.643 | 0.585 | 0.488 |
| Raw | 22.870 | 36.035 | 46.014 | 85.254 | 10.312 | 8.616 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4568.10 | 2344 | 7e-23 | 1383 - 1443 | 98 | 60 / 61 | plus | ABC16561 |
| MLOC | MLOC_4568.3 | 2590 | 7e-23 | 1246 - 1306 | 98 | 60 / 61 | minus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.1 | 1520 | 7e-23 | 1246 - 1306 | 98 | 60 / 61 | minus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.4 | 2649 | 7e-23 | 1246 - 1306 | 98 | 60 / 61 | minus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.2 | 2119 | 7e-23 | 1246 - 1306 | 98 | 60 / 61 | minus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.9 | 2396 | 7e-23 | 891 - 951 | 98 | 60 / 61 | minus | ABC16561 |
| MLOC | MLOC_4568.6 | 2773 | 7e-23 | 1246 - 1306 | 98 | 60 / 61 | minus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.7 | 2668 | 7e-23 | 1246 - 1306 | 98 | 60 / 61 | minus | ABC03517 ABC16561 |
| MLOC | MLOC_4568.8 | 2708 | 7e-23 | 1246 - 1306 | 98 | 60 / 61 | minus | ABC03517 ABC16561 |
| JLOC1 | JLOC1_2861.8 | 2663 | 4e-23 | 1358 - 1418 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_2861.7 | 2681 | 4e-23 | 1376 - 1436 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_2861.6 | 2688 | 4e-23 | 1383 - 1443 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_2861.5 | 2674 | 4e-23 | 1369 - 1429 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_2861.4 | 2650 | 4e-23 | 1345 - 1405 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_2861.3 | 2603 | 4e-23 | 1298 - 1358 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_2861.2 | 2610 | 4e-23 | 1305 - 1365 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_2861.1 | 2455 | 4e-23 | 1150 - 1210 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC27223 | 705 | 3e-25 | 615 - 674 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28384 | 705 | 3e-25 | 615 - 674 | 100 | 60 / 60 | plus |
Contig Sequence (705 bp)
>U35_28384 705 Hv_44K_v2 GGGCACGCAGGTCAAAACTCAACCTTGTTGGAGCCCATATAAATGTCTTCACTGGTGAAT GGACACAAAAGGATGCAGGAATCGGCACAAGCATCGACTCATTCTACGAATATCTTCTGA AGGCATATTTATTGTTCGGAGATGAAGAATACTTGTATGTATTTGAAGAGGCTTACAAGG CTGCCATGCACTACCTCCACCATGATCCTTGGTATATTGAGGTAAATATGAATTCTGGTG CTACTGTTTGGCCACTATTCAATAGTCTGCAGGCATTCTGGCCAGGACTTCAGGTTTTAG CTGGAGATGTCGATCCTGCCATTCGAACACATGCTGCCTTCTTTAGCGTCTGGAAAAAAT ATGGGTTCACTCCAGAAGGGTTTAATCTCGCTACATCTACTGTTCAGAATGGACAACGGA GCTACCCGCTGCGGCCTGAGTTGATTGAAAGCACATATTGGCTATTCAAGGCTACCAGAG ATTTTAGGTACCTTGATGTTGGAAGGGACATACTAGCAAGCCTTCAATATGCTGCTAAAT GTCCTTGTGGCTACTGCCACATATCAGATGTGGAAACCCACAAGCAGGATGACCACATGG AGAGTTTTTTCCTTGCAGAAACGGTAAAATATCTCTGGCTTCTTTTTGATTTAGCTGTAG GCCCTGATACATTGNTGAAAATGGGCCTTATAAATACATATTCAG
Homology of Contig U35_28384 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g56670.1 | 685 | 2e-159 | protein|glycosyl hydrolase family 47 domain contain protein, expressed |
| Brachypodium v1_2 | Bradi2g51467.1 | 675 | 8e-158 | |
| Arabidopsis v10 | AT5G43710.1 | 624 | 1e-142 | Glycosyl hydrolase family 47 protein | chr5:17552252-17556523 REVERSE LENGTH=624 |