barSeed - Barley Seed Development Database

Probe CUST_13454_PI390587928

Source Contig U35_28389

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13454_PI390587928	Hv_44K_v2	ATGGCTTGTCCGCTATGTTTGCCTATATGCGTTTAAATGTTGTCCTGCATGTATAGTCTG	663	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36980.1	3046	2e-24	1397 - 1456	100	60 / 60	plus	ABC04073 ABC04074
Harvest21	ABC27231	726	3e-25	664 - 723	100	60 / 60	plus
Harvest35	U35_28389	726	3e-25	664 - 723	100	60 / 60	plus

Contig Sequence (726 bp)

>U35_28389 726 Hv_44K_v2
GCTATGCTATAACTTCCTTTGTTGGCCTTCTGGATATTAAGGGAAGCAAAACGTTTTTTA
CATGCTTGGAGTCTGTTAAAGGATGCTATGAGGCACTGGTTATTGCTAAGTTTCTGGCAT
TGATGTACAGCTACTTGAATATATCTATTAGCAAAAACATTGTACCTGATGAAATCAAAG
GGAGGGCTCTTCATCATTCTTTCCCTGTCTCTCTTTTCCTGGTATCTTCTTACACCCTCG
CATACTCTTATAGGAAGTTCGATGAATGTTGCTGTAATCTACTATTGAACTTTGGTATTG
CAACCTGCACTATAGTAAGGGGGCATACCCATACAGCCATACTGAATCTTTACATATTTG
AAGGATGCTGCATTGTTCAGTAGTACTAAAATGATTCGCGGTCTTAACAAAAAGGCTTAT
ATACTCCATTAATAAAGTACCTATTCATATAGTAATATCTGGTTAATTGGAGCATGTACA
TATGAGTAGTCATTGTTCAGTAATATTAAAATGATTTGCGGTCTTAACAAAAAGGTTTAT
ATACTCCATTAATAAAGTACTTATTCAGATAGTAATATCTGCTTGCCAAAACGTTTTATA
TTTTGGAATGGAGGTAGCATACGAGTAGTCATGCTTGAGTTATGATTTTAACTTCGATTC
TCCATGGCTTGTCCGCTATGTTTGCCTATATGCGTTTAAATGTTGTCCTGCATGTATAGT
CTGGAA

Homology of Contig U35_28389 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None