barSeed - Barley Seed Development Database

Probe CUST_13450_PI390587928

Source Contig U35_28390

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13450_PI390587928	Hv_44K_v2	ACTTCAAAATGTTGGTGTTACCAGTATATTCTGTTGGGCAGATAAGGTCTCTGAAGGATT	570	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374248	1996	2e-24	576 - 635	100	60 / 60	plus	ABC18768
MLOC	MLOC_6581.2	1654	2e-24	200 - 259	100	60 / 60	plus	ABC18768
MLOC	MLOC_6581.4	1493	2e-24	127 - 186	100	60 / 60	plus	ABC18768
MLOC	MLOC_6581.3	1023	2e-24	136 - 195	100	60 / 60	plus	ABC18768
MLOC	MLOC_6581.1	1911	2e-24	452 - 511	100	60 / 60	plus	ABC18768
JLOC1	JLOC1_4297.1	1798	8e-25	342 - 401	100	60 / 60	plus
Harvest21	ABC27233	633	3e-25	571 - 630	100	60 / 60	plus
Harvest35	U35_28390	633	3e-25	571 - 630	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_28390 633 Hv_44K_v2
GGCGCCCGAGCAACTGGACGACCAGATGGGGAGACCACGGAAGACGAAGGCGAAGGCCGA
GGCCCCGCCCCCCGCCCTCTCCATCGGCAACTGCAAGGTGGAGATCCACGGGAGCGGCCT
AAGGTGCGCGTCCACGGAGCAGAATCTCACCATTTCGGGAACCAGGGGCGCGAAGATTCT
CATCACTGTCGATGGAGCCAGGAGTTCTTCGGGTGGGACTGGTGAGGGGTCTGATTTCAT
CCTTCTGAACCCCAATGAAGCCGATAGCCTAAATAAATCTTTGCTCCAGGAAGTATTGAG
GCTTTATAAGAAGGAGCTTTCAACTATGGACTATGCTGCTGACACTGGGAAAAAATCAGG
ATTTCTCGAAAAATGCATAATGAATGGGAAGTACAAGACTCTAATTCTGAGGTCTAGTTC
ACTTGCCGGGCCTGAAGAGATCATAGCTGCTGTATCATATCAGATAGTGCCAGCTGACAC
ACAATATGCTGAAATACCCCTGGCAGCCGTGACATCGCCTTTTCAACGTGTGGGTTTTGG
TCATCTGTTGTATAAGGAACTTAGCCAGCGACTTCAAAATGTTGGTGTTACCAGTATATT
CTGTTGGGCAGATAAGGTCTCTGAAGGATTTTG

Homology of Contig U35_28390 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g31254.1	613	3e-85	protein\|acetyltransferase, GNAT family, putative, expressed
Brachypodium v1_2	Bradi2g27097.1	588	2e-102
Arabidopsis v10	AT2G41450.1	612	7e-51	N-acetyltransferases;N-acetyltransferases \| chr2:17278190-17281637 FORWARD LENGTH=612