- Probe CUST_1343_PI390587928
- Source Contig U35_30074
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1343_PI390587928 | Hv_44K_v2 | ACGAGTCAGACATCTGGGGGTCGTTCAACCCGGCAGAGGAGGCCGAACAACTGGCAAGGT | 40 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.077 | 0.146 | 0.772 | 1.971 | 1.635 | 2.407 |
| Raw | 14.732 | 46.851 | 208.276 | 840.170 | 241.797 | 387.000 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70557.1 | 1229 | 2e-24 | 363 - 422 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_46829.1 | 1096 | 8e-25 | 303 - 362 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29773 | 482 | 3e-25 | 41 - 100 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30074 | 482 | 3e-25 | 41 - 100 | 100 | 60 / 60 | plus |
Contig Sequence (482 bp)
>U35_30074 482 Hv_44K_v2 CCGGCCACGGCAAGGGGCCCCGTCACGGCCGACGAGTTCGACGAGTCAGACATCTGGGGG TCGTTCAACCCGGCAGAGGAGGCCGAACAACTGGCAAGGTCGGGCGCCGAGCTACCCCGG GTCCGTGCAGTCCCGTCTGCCCGTCCCGGGAGGAAGGCGAAGCCGGTGGACAGGACCGGC GGGGGCGGCGCCGCGCACGGGTCGCTGCCCGTGGCCATACCGGACTGGTCCAAGATCCTT GGGGATGAGTACCATGGGCGCCAGGCCGGGGACTGGGAGCTGGACGACGCGGACGACGAG GACATCGAGGGCGCCCCGGTGGTGCCGCCGCACGAGCTGGCGTGGCGGCGCCGGGCCGCA TCGCTGTCGGTGAACGACGGGATGGGGGTCGGCAGGATGCTCAAGGTCAGGGACGCGGTC TGGAAGAAGACGGGGTTCCAGGCCTGACGCGCTCGGGCCCGGCCTCGTCGCCACTACTAC TC
Homology of Contig U35_30074 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |