- Probe CUST_13438_PI390587928
- Source Contig U35_28398
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13438_PI390587928 | Hv_44K_v2 | ATTATAAGTGTGTGTCAGAAACTCAATCTAAAAGAAGTACATTGCTGTTCTTCCGAGGAA | 593 | GeneList: darkgreen MasterList: Transferase_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.943 | 1.199 | 1.777 | 1.363 | 0.790 | 0.692 |
| Raw | 9.171 | 16.822 | 23.407 | 28.386 | 4.539 | 4.189 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376459 | 1746 | 2e-24 | 876 - 935 | 100 | 60 / 60 | plus | ABC49967 |
| MLOC | MLOC_59543.1 | 1499 | 2e-24 | 781 - 840 | 100 | 60 / 60 | minus | ABC49967 |
| MLOC | MLOC_59543.3 | 1062 | 2e-24 | 389 - 448 | 100 | 60 / 60 | minus | ABC49967 |
| MLOC | MLOC_59543.2 | 1479 | 2e-24 | 781 - 840 | 100 | 60 / 60 | minus | ABC49967 |
| JLOC1 | JLOC1_38756.4 | 1603 | 8e-25 | 659 - 718 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38756.3 | 1583 | 8e-25 | 639 - 698 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27242 | 656 | 3e-25 | 594 - 653 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28398 | 656 | 3e-25 | 594 - 653 | 100 | 60 / 60 | plus |
Contig Sequence (656 bp)
>U35_28398 656 Hv_44K_v2 GGCGGAGGAGGCCCGGCTGTACGGGGACCCCCGGGGCGCGTGGCCGTCGGCGCCCGCGCC GCTCAGGGTCTACGTGTACGAGATGCCGCGCAAGTTCACCTACGATCTGCTCAGGCTCTT CAGGGACTCGTACCGCGACACCACCAACCTCACCTCCAACGGGAGCCCCGTGCACAGGCT CATCGAGCAGCATTCTATTGACTACTGGCTGTGGGCTGATCTAATTGCTCCTGAATCACA AAGACTTCTGAAGAATGTTATCAGGGTTGAGCGGCAAGAAGAAGCAGACATTTTCTACGT TCCATTTTTCACAACAATCAGTTACTTCTTGCTGGAGAAACAAGAATGCAAGGCACTTTA TAGGGAAGCTTTGAAGTGGGTGACTGATCAACCTGCTTGGCAACGTTCAGAAGGCAGAGA TCATGTTATTCCTGTTCATCACCCATGGTCTTTTAAGTCAGTCCGAAGATTTGTTAAGAA AGCAATATGGCTTCTACCTGATATGGATTCTACTGGGAACTGGTATAAACCTGGGCAAGT TTATCTTGAAAAGGATGTTATCCTTCCATATGTCCCAAATGTTGACCTTTGTGATTATAA GTGTGTGTCAGAAACTCAATCTAAAAGAAGTACATTGCTGTTCTTCCGAGGAAGAC
Homology of Contig U35_28398 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g59630.1 | 500 | 2e-149 | protein|exostosin family domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g53000.1 | 496 | 1e-153 | |
| Arabidopsis v10 | AT5G16890.1 | 511 | 7e-122 | Exostosin family protein | chr5:5551664-5554741 FORWARD LENGTH=511 |