barSeed - Barley Seed Development Database

Probe CUST_13430_PI390587928

Source Contig U35_42697

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13430_PI390587928	Hv_44K_v2	ATGTAATGTAGGTGTTGCTGATGACTGAAACATTTTTCTTTTGCTCAGATGGCCGGGGCG	300	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.182	0.436	1.230	1.447	0.800	1.408
Raw	3.090	18.605	47.216	85.039	16.934	32.557

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6262.3	1217	2e-24	719 - 778	100	60 / 60	minus	ABC38527
MLOC	MLOC_6262.5	1022	2e-24	503 - 562	100	60 / 60	minus	ABC38527
MLOC	MLOC_6262.1	1128	2e-24	1032 - 1091	100	60 / 60	minus	ABC38527
MLOC	MLOC_6262.2	1196	2e-24	941 - 1000	100	60 / 60	minus	ABC38527
MLOC	MLOC_6261.1	4083	2e-24	3986 - 4045	100	60 / 60	minus	ABC38527
Harvest21	ABC38527	470	3e-25	301 - 360	100	60 / 60	plus	ABC38527
Harvest35	U35_42697	470	3e-25	301 - 360	100	60 / 60	plus

Contig Sequence (470 bp)

>U35_42697 470 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCTTGAATTTGTTTCTTAGTTATACATCGGTACAATATCGGAG
ATGAGATGAAACAATTTTTGGCCAGATAGACACGCGCCGTTTGGCACGTACGTATTTGAT
CATCAGTTCAGGAGTAGGAATTGGTTGTCGTAGCTCGTAGATATACATGGACGAATGGGT
GCCGCACTGTTGGGCGGCAACTGCCACTTCCTCCGTGGTGGCATGCTTCGCCGTTCTTCA
GTCCTCCTTGTCTCTTGTGGCCACTGGCCAAAAAATATATCTGTACGTATGTATGTACAG
ATGTAATGTAGGTGTTGCTGATGACTGAAACATTTTTCTTTTGCTCAGATGGCCGGGGCG
GCGCGCTGGTGAAGCTCCACGACGACGTGCAGACGTGCGCGTACGAGGACGTGCAGGTCA
TGTGGGAGATGCTACAGCGCTCCGAGACGGAGAAGATGATGGCCGGGGCG

Homology of Contig U35_42697 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None