barSeed - Barley Seed Development Database

Probe CUST_13425_PI390587928

Source Contig U35_1603

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13425_PI390587928	Hv_44K_v2	GCAAGAGCATCTACAACGGCTGCATAAAAATTTCGCTATCAATAAAAATTATAATGCGTC	1065	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.451	5.255	1.226	0.499	0.333	0.720
Raw	190.493	199.885	38.483	23.399	5.095	13.830

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362341	1174	2e-24	1109 - 1168	100	60 / 60	plus	ABC04526 ABC04527 ABC04529
MLOC	MLOC_23863.1	535	2e-24	387 - 446	100	60 / 60	plus	ABC04526 ABC04527 ABC04529
JLOC1	JLOC1_16458.1	510	8e-25	387 - 446	100	60 / 60	plus
Harvest21	ABC04527	1149	3e-25	1067 - 1126	100	60 / 60	plus	ABC04527
Harvest21	ABC04526	1180	3e-25	1073 - 1132	100	60 / 60	plus	ABC04526
Harvest35	U35_1603	1173	3e-25	1066 - 1125	100	60 / 60	plus

Contig Sequence (1173 bp)

>U35_1603 1173 Hv_44K_v2
GTCACACTTCGCTCTTCACACACAGCCAAGATCCACAGAGATGATCCGAGCGATGCAGGT
CGTCGTCAGGGGGGAGATCCGCCGGGCAGCGGTGGCTGGCGCTGGCTTCGTCGGACACTG
CGGCTACTCCACCGTGATCACCAGCTCCCAGAGGTTGGCTGGGAAGGTGGCCGTCATCAC
CGGCGGGGCAAGCGGCATCGGCAAGGCGACGGCGGCCGAGTTCGTCAGGAACGGCGCCAA
GGTCATCCTCGCCGACGTCCAGGACGACCTGGGCCGCGCCGTGGCGGCCGAGCTTGGCCC
GAACGCGGCATGCTACGCGCGCTGCGACGTGACCGACGAGGCGCAGGTCGCCGCGGCGGT
GGACCTCGCCGTGGCCCGCCACGGCAAGCTGGACATCATGCTCAACAACGCCGGCATCAT
GGGCTCCCTGGCGCGTCCCCGGCTGAGCGACCTCGACCTCGCCGACTTCGACGCCGTCAT
GGCCATCAACGCCCGGGGCGTGCTGGCCGGGGTGAAGCACGCGGCCCGCGTCATGGCGCC
GCGCCGCAGCGGCAGCATCATCTGCATGGCCAGCGTCGCCGGCGTGCTGGGCAGCGTGAC
GCCGCACCCGTACAGCGTGTCCAAGGCGACCGTGCTGGGGGTCGTGCGCGCCGTGGCCGG
GGAGATGGCGCGCTCCGGGGTGCGCGTCAACGCCATCTCGCCCAACTACATCCCGACGCC
GCTGGTGATGCGCATCCTGGAGCAGTGGTACCCGAAGGCCAGCGCCGAGGAGCACCGCCG
GATCGTGGAGGGGGACATCAACGAGATGGAGGGCGCCGTGCTGGAGCCTGACGATATCGC
GAGGGCGGCGCTCTACCTGGCGTCCGACGAGGCCAAGTACGTCAACGGGCACAACCTCGT
CGTCGACGGCGGTTTCACCGTGGGGAAGGCGCCCAACATGCCGCCGGCGCCGGCGCTGTA
AAACGACGCAAGCACTTGAAATAAATTAATTGGCGTTGTATTGCACCAGAACCATCGAGC
TCGAGCTGTAAAACGAAGCGAGCTTGAGCATTGCGTTTTTCGAAAGCAAGAGCATCTACA
ACGGCTGCATAAAAATTTCGCTATCAATAAAAATTATAATGCGTCATTTTTAAAAAAAAA
AAAAAAAAATTATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1603 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46830.1	297	1e-150	protein\|sex determination protein tasselseed-2, putative, expressed
Brachypodium v1_2	Bradi5g13830.1	296	3e-139
Arabidopsis v10	AT3G26760.1	300	3e-88	NAD(P)-binding Rossmann-fold superfamily protein \| chr3:9843639-9844899 FORWARD LENGTH=300