barSeed - Barley Seed Development Database

Probe CUST_13424_PI390587928

Source Contig U35_1604

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13424_PI390587928	Hv_44K_v2	TCAGGTAACGTTGCAGTTGGATTCGGAAGAGGACATCACATCAATCAAATCTACCTACGC	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362341	1174	2e-24	20 - 79	100	60 / 60	plus	ABC04526 ABC04527 ABC04529
Harvest21	ABC04528	525	3e-25	55 - 114	100	60 / 60	plus
Harvest35	U35_1604	527	3e-25	55 - 114	100	60 / 60	plus

Contig Sequence (527 bp)

>U35_1604 527 Hv_44K_v2
CTCTTCACACACAGCCAAGATCCGCAGAGATGATCCGAGCGATGCTGGTCGTCGTCAGGT
AACGTTGCAGTTGGATTCGGAAGAGGACATCACATCAATCAAATCTACCTACGCCCTGCA
TGTGCGTGCTAATCTTGCTGTGTGTTGCAGTGGGGAGAGCCGCCGGGCAGCGGTGGCTGG
CGCTGGCTTCGTCGGCCACTGCGGCTACTCCACGGCCTCGAGCTCCCAGAGGTTGGCTGG
CAAGGTGGCCGTGATCACCGGCGGGGCCAGCGGCATCGGCAAGGCGACGGCGGCCGAGTT
CGTCAGGAACGGCGCCAAGGTCGTCCTCGCCGACGTCCAGGACGACCTGGGCCACGCCGC
GGCGGCCGAGCTTGGCCCGAACGCGGCATGCTACGCGCGCTGCGACGTGACCGACGAGGC
GCAGGTCGCCGCGGCGGTGGACCTCGCCGTGGCCCGCCACGGCAAGCTGGACATCATGCT
CAACAACGCCGGCATCGTGGGCTCCCTGGCGCGTCCCCGGCTGAGCG

Homology of Contig U35_1604 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None