barSeed - Barley Seed Development Database

Probe CUST_13423_PI390587928

Source Contig U35_1605

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13423_PI390587928	Hv_44K_v2	TGCCGTCGGCGCCAGCGCTGTAAAACGAAGCAAGCACTTGAAATAAATTAATTCGCGTTG	941	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373079	1084	2e-24	1021 - 1080	100	60 / 60	plus	ABC04526 ABC04527 ABC04529
MLOC	AK357628	1606	2e-24	951 - 1010	100	60 / 60	plus	ABC04526 ABC04527 ABC04529
MLOC	MLOC_49222.1	433	2e-24	142 - 201	100	60 / 60	plus	ABC04526 ABC04527 ABC04529
JLOC1	JLOC1_31530.1	427	8e-25	143 - 202	100	60 / 60	plus
Harvest21	ABC04529	1022	3e-25	942 - 1001	100	60 / 60	plus	ABC04529
Harvest35	U35_1605	1022	3e-25	942 - 1001	100	60 / 60	plus

Contig Sequence (1022 bp)

>U35_1605 1022 Hv_44K_v2
GGTCACACTTGACTTCGCTCTTTACACACCGCCAAGATCCACAGAGATGATCCGAGCGAT
GCAGGTCGTCGTCAGTGGGGAGAGCCGCCGGGCAGCGGTGGCTGGCTTCGGCTTCGTCGG
CCACTGCGGCTACTCCATGGCCTCGAGCTCCCAGAGGTTGGCTGGCAAGGTGGCCGTGAT
CACCGGCGGGGCCAGCGGCATCGGCAAGGCGATGGCGGCCGAGTTCGTCAGGAACGGCGC
CAAGGTCGTCCTCGCCGACGTTCAGGACGACCTGGGCCGCGCCGCGGCGGCCGAGCTTGG
CCCGAACGCGGCATGCTATGCGTGCTGCGACGTGACCGACGAGGCGCAGGTCGTCGCGGC
GGTGGACCTCGTCGTGGCCCGCCACGGCAAGCTGGACATCATGCTCAACAACGTCGGCAT
CGTGGGCTCCCTGGCGCGTCCCCGGCTGAGCGACCTCGACCTCGCGGACTTCGACGCCAT
CATGGCCATCAACGCCCGGGGCGTGCTAGCCGGGATGAAGCACTCGGCCCGCGTCATGGC
GCCACGCCGCAGCGGCAGCATCATCTGCATGGCCAGCGTCGCCGGCGTGCTGGGCAGCGT
GACGCCGCACCCGTACAGCGTGTCAAAGGCGGCGGCGTTGGGGGTCGTGCGCGCCGTGGC
CGGGGAGATGGCGCGCTCCGGGGTGCGCGTCAACGCCATCTCGCCCAACTACATCCCGAC
GCCGCTGGTGATGCGTATCCTGGAGCGGTGGTACCTGAAGGCCAGCGCCGAGGAGCACCG
CCGGATCGTGGAGGGGGACATCAACGAGATGGAGGGCGCCGTGCTAGAGCCGGACGATAT
CGCGAGGGTGGCGCTGTACCTGGCGTCCGACGAGGCCAAGTACGTCAACGGGCACAACCT
CGTCGTCGACAGCAGGTCCTCCGTGGGGAAGGCGCCCAACATGCCGTCGGCGCCAGCGCT
GTAAAACGAAGCAAGCACTTGAAATAAATTAATTCGCGTTGTATTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_1605 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46830.1	297	1e-141	protein\|sex determination protein tasselseed-2, putative, expressed
Brachypodium v1_2	Bradi5g13830.1	296	2e-127
Arabidopsis v10	AT3G26760.1	300	2e-76	NAD(P)-binding Rossmann-fold superfamily protein \| chr3:9843639-9844899 FORWARD LENGTH=300