barSeed - Barley Seed Development Database

Probe CUST_13422_PI390587928

Source Contig U35_1606

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13422_PI390587928	Hv_44K_v2	AAATTAATTGGCGTTGTATTGCACCAGAACCATCGAGCTCGAGCTGTAAAACGAAGCGAG	996	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.346	6.136	1.316	0.529	0.265	0.721
Raw	345.070	348.207	60.974	39.728	6.093	20.041

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362341	1174	2e-24	1026 - 1085	100	60 / 60	plus	ABC04526 ABC04527 ABC04529
MLOC	MLOC_23863.1	535	2e-24	304 - 363	100	60 / 60	plus	ABC04526 ABC04527 ABC04529
JLOC1	JLOC1_16458.1	510	8e-25	304 - 363	100	60 / 60	plus
Harvest21	ABC04527	1149	3e-25	984 - 1043	100	60 / 60	plus	ABC04527
Harvest21	ABC04526	1180	3e-25	983 - 1042	100	60 / 60	plus	ABC04526
Harvest35	U35_1606	1100	3e-25	997 - 1056	100	60 / 60	plus
Harvest35	U35_1603	1173	3e-25	983 - 1042	100	60 / 60	plus

Contig Sequence (1100 bp)

>U35_1606 1100 Hv_44K_v2
CTGGCTCGCCTCGCCAAGTCACACTTCGCTCTTCACACACAGCCAAGATCCGCAGAGATG
ATCCGAGCGATGCTGGTCGTCGTCAGTGGGGAGAGCCGCCGGGCAGCGGTGGCTGGCGCT
GGCTTCGTCGGCCACTGCGGCTACTCCACGGCCTCGAGCTCCCAGAGGTTGGCTGGCAAG
GTGGCCGTGATCACCGGCGGGGCCAGCGGCATCGGCAAGGCGACGGCGGCCGAGTTCGTC
AGGAACGGCGCCAAGGTCGTCCTCGCCGACGTCCAGGACGACCTGGGCCACGCCGCGGCG
GCCGAGCTTGGCCCGAACGCGGCATGCTACGCGCGCTGCGACGTGACCGACGAGGCGCAG
GTCGCCGCGGCGGTGGACCTCGCCGTGGCCCGCCACGGCAAGCTGGACATCATGCTCAAC
AACGCCGGCATCGTGGGCTCCCTGGCGCGTCCCCGGCTGAGCGACCTCGACCTCGCCGAC
TTCGACGCCGTCATGGCCATCAACGCCCGGGGTGTGCTGGCGGGGGTGAAGCACGCGGCC
CGCGTCATGGCGCCGCGCCGCAGCGGCAGCATCATCTGCATGGCCAGCGTCGCCGGCGTG
CTGGGCAGCGTGACGCCGCACCCGTACAGCGTGTCAAAGGCGGCGGTGTTGGGGGTCGTG
CGCGCCGTGGCCGGGGAGATGGCGCGCTCCGGCGTGCGCGTCAACGCCATCTCGCCCAAC
TACATCCCGACGCCGCTGGTGATGCGTATCCTGGAGCAGTGGTACCCGAAGGCCAGCGCC
GAGGAGCACCGCCGGATCGTGGAGGAGGACATCAACGAGATGGAGGGCGCAGTGCTGGAG
CCGGACGACATCGCGAGGGCGGCGCTCTACCTGGCGTCCGACGAGGCCAAGTACGTCAAC
GGGCACAACCTCGTCGTCGACGGCGGGTTCACCGTGGGGAAGGCGCCCAACATGCCGCCG
GCGCCGGCGCTGTGAAACGAAGCGAGCACTTGAAATAAATTAATTGGCGTTGTATTGCAC
CAGAACCATCGAGCTCGAGCTGTAAAACGAAGCGAGCTTGAGCTTGAGCTTGAGCGTTTT
TCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1606 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46830.1	297	2e-142	protein\|sex determination protein tasselseed-2, putative, expressed
Brachypodium v1_2	Bradi5g13830.1	296	1e-133
Arabidopsis v10	AT3G26760.1	300	1e-82	NAD(P)-binding Rossmann-fold superfamily protein \| chr3:9843639-9844899 FORWARD LENGTH=300