- Probe CUST_1341_PI390587928
- Source Contig U35_30076
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1341_PI390587928 | Hv_44K_v2 | AATTGTAAATGCTGCCAGGGCTGCTAAAACGGCAAGGCTTATGAAAGCAAAAGAAGAGGC | 216 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.391 | 0.460 | 0.894 | 1.729 | 1.429 | 2.796 |
| Raw | 1408.131 | 2512.642 | 4383.353 | 13816.150 | 3809.603 | 8279.523 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_28316.1 | 751 | 7e-23 | 401 - 460 | 98 | 59 / 60 | minus | ABC00251 |
| JLOC1 | JLOC1_19011.1 | 882 | 4e-23 | 225 - 284 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC51623 | 513 | 1e-23 | 451 - 510 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00251 | 826 | 1e-23 | 225 - 284 | 98 | 59 / 60 | plus | ABC00251 |
| Harvest35 | U35_30076 | 402 | 3e-25 | 217 - 276 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15204 | 949 | 1e-23 | 440 - 499 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_15203 | 759 | 1e-23 | 165 - 224 | 98 | 59 / 60 | plus |
Contig Sequence (402 bp)
>U35_30076 402 Hv_44K_v2 TTTTCCCCACGGATCCTTCTCGTCTTCCACGTGATTCGAGTCGCCTCTCTCCGTCAGGTA GCTGGGTCCTGGAATCAGGCAATTGCTGGGTCCTTGAAGCGAAATACTACTTCTGTGGCA GCTTTGTAGCTCAACCGTGTGGAGCCCAAACATGGACGCAAGCAGGCGCCCAAGTGGAAT CCAGCAATTGCTTGCTGCAGAGCAAGATGCTCAGCAAATTGTAAATGCTGCCAGGGCTGC TAAAACGGCAAGGCTTATGAAAGCAAAAGAAGAGGCGGAGAGAGAGATAGCTGAGTACCG TGCGCAGATGGAGGCTGATTTCCAGAGAAAGCTCACCGAGACCAGCGGTGACTCTGGTGC AAATGTCAAACGCCTTGAGCAAGAGACAAACGTAAAAATTGA
Homology of Contig U35_30076 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |