barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13412_PI390587928Hv_44K_v2TTGTTACTGTCCTGAATGAAATGCATCCTTTTGGTGGCGCCGTCTGCTGTTCATGTCAAA2711GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1851.4141.2250.9380.4000.412
Raw 694.7861305.125985.1631170.797177.117197.782



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_32228.13376e-211 - 5310053 / 53minus
Harvest35U35_161627853e-252712 - 277110060 / 60plus



Contig Sequence (2785 bp)

>U35_1616 2785 Hv_44K_v2
CCACGCCTGCATTTGGCACCCCGTCGTCCTCTCCGTTTGGGAGCTCCACGCCAGCTTTTG
GTTCATCGCCAGCCCCGGCGTTTGGCGCCACATCCTCTAACTTTGGTGGTGGATCTTTAT
TCGGACAAAAGCCAAGCTTTGGGGGTTTTGGATCATCTCCTAGCCAGTCTAGTCCATTTG
GTAGCACATTTCAGCAAACACAGCCAACATTTGGCAACAGCACTTTTGGCACCACAACTA
CGCCGGCCTTTGGTTCCACAACGACGGCAGCATTTGGCTCCACAACAGCTCCAGCATTTG
GCTCCACAACAACATCCTTATTTGGTGGTGCCTCCAGCACCCCAGCATTTGGTTCGACGC
CCTTTGGTTCGAACACAACTCCTGGTTTTGGATCTTCAGGTACTGGAGCATTTGGTGTGA
ATAGTGCTCCAGCTTTTGGAACTTCAACCACACCAGCAAGTGCTTTTAATTTTGGTTCTT
CACCGTCTTTTGGACAATCAGCAGCAGCAACTGGTAGCACCCTCTTTGGAACAAATTCAC
CCTTTGGAGCACAAACTTCTCCGTTCGGCTCGCAAACAGCTGCACCAGCATTCGGGCAAA
CTACGTTTGGAAGTCAATCTGGAGGAACCAGAATACAGCCTTATGTACAAACACCTGATG
CTGACACTGCTGCAAGTGGTTCTCAGCCTGCTGCAAAACTTGATTCCATATCAGCCATGC
CTGCATACAAAGAGAAGAGTCATGAAGAATTGAGGTGGGAAGATTACCAGCGTGGGGACA
AAGGTGGACCAAACTCTTCTGCAACTCCAGCAGCAGTGAACAACTTCTTATCTCAACAGC
CGAATTTTCAATCAAATCAACCAGCACCTGCGAATCCATTTACTAACCCTTCGGCCTCAC
CTTTTTCGAGTGCTTTTGGTACTACTCCGAACCCGTTTTCATCGTCTGCAACTACTACCT
CCTCGTTTGGACAAACAAGTGGGTCTACATTCCCAGCAAACACTTCATCTTCTCTATTTG
GAAATAATACCACTACTTCACTATTCAACAACCCAAATCCCTTCAATGCTGGGTCATCCA
TTAGTAATAGCACTCAATCATCTGGGCTGTTTACGTCTTCTCCTCTAATGGGGCAGCAGC
CATTTAGCCACTCATTTAACCAGCAATCAAGTACTCCAGCTTTCTCCACCAGTATGTTCA
ATACATCTAACATCGGAAGCACTGGAGGGATGTTTGGCAACACATCTTCACCTTTTCAGA
CACCATCATTTCAACAATCTACCCCTATTCAACCTACAAACTCGTTCTCATTCCAACCTC
AGACTCAACCAGCTTTGACAGGTGGATTCTCTGGTGTTTCCAACCTGATGAGTATGGCTC
CATTCGGACAGCAAACTACTAGCCAGTCCAATATGGTATTGCAGCCGACTCTTGTTTCAA
ATCCCTTTGGGACACTTCCATCAATGCCTCAGATGTCCATTGGGAATGGTGGATCCTCAC
CTTCTATCCAATATGGGATATCAAGTTTGCCGGTTGCTGAGAAGCCCCTTCCGAGCAGAA
CATTATCCATGGTGGTTCCTAGGCATTTATCACAGAGGAGGATAAAGCTGCTGCCACGAA
AATATAATGCAACATCTGATGGCAAGGTTCCATTCTTTGCTGATGATGAAGAATCCCCTG
TAACACCAAAAGCGGATGCCTTTTTCATCCCTAGAGAGAACCCAAGAAGTCTGATAATCC
GTCCAACAGACCAGTGGCCTTCACGTAGTACGGTTGGCCAACAATCAATTCCAAGGGATT
CAACTGATAATGGCAAACATAAAGATGCTTTTTTTGGGAGGGAGCACAATAAGGCTGCCA
TGACACCAACTCGGTCTGGTACAGTGGACAATGGCATCCACATTGATAACCATCGTGCAT
CAAGCGAGCCTGGGGCCGTGACACCGCCTGTGAATGGTGCTACCGTTGAGAAGATGGTGC
CTAAGCTCTCCCAGGCAGATTACTTCACGGAGCCCAGTCTAGAGGAGCTTGCTGCCAAAG
AACGTGCCGAGCCAGGCTACTGTAGTCAGGTTGTAGACTTCATTGTTGGGCGTGAAGGCT
ATGGCAGCATCAAATTCTTGGGAGAAACTGATGTGAGGGGCCTTGATCTGGAGTCAACTG
TGGAATTCAGTAACCGTGAAGTGATTGTGTACAAGGACGATAGCAAGAAGCCCCCAGTTG
GCGAGGGCCTGAACAAAGCTGCTTTGGTGACCCTCCTGAACATCAAGTGCATGAATAGGA
AGACGGACGAGCAGTACACGCAAGGTCCGAGGTTTGACAAGTTCAAGGAGATGCTGGTGA
AGAAGGCTGAGGAACAGGGAGTGGAGTTTATCTCGTTTGATGGCGCCAAGGGCGAGTGGA
AGTTCAGAGTGAAGCACTTCAGCTCCTACGGGTTTGGTGAAGCCGAAGCCGACCACCTGG
CTGATTCCTTGTAGCTTTATCGATAGGTGTTGTAATTGCTGCCTCTTTTGGATGATTGGT
GAACACTCGATTCTATGTAGCTTTGGTCGATGTAGCTGATCTGGTCTGGGAGAATATTGG
TTGTGATGCTTTTGTTCTCTGAATGCTGCTATGAGTTCCTTCCCATGTTTTTCTGTACAT
ATCTTTTTTCATTGAAGAATGCACAAAAGTTACATTCTGGCAAAAAAAAAAAAAATGCGT
GGATTGGAATCTTGTTACTGTCCTGAATGAAATGCATCCTTTTGGTGGCGCCGTCTGCTG
TTCATGTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_1616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os12g06890.19370.0protein|OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed
Brachypodium v1_2Bradi2g08980.17990.0
Arabidopsis v10AT1G10390.110410.0Nucleoporin autopeptidase | chr1:3407265-3412045 REVERSE LENGTH=1041